Building blocks for 'RNA world' made from simple ingredients

Nature ◽  
2016 ◽  
Author(s):  
Davide Castelvecchi
Keyword(s):  
Rna World ◽  
Building Blocks

Chemical evolution toward the origin of life

2007 ◽  
Vol 79 (12) ◽  
pp. 2101-2117 ◽  
Author(s):  
Daniel Fitz ◽  
Hannes Reiner ◽  
Bernd Michael Rode
Keyword(s):  
Chemical Evolution ◽  
Rna World ◽  
Early Stage ◽  
Building Blocks ◽  
Point Of View ◽  
Peptide Formation ◽  
The Origin Of Life ◽  
Life On Earth ◽  
Primordial Earth ◽  
Rna And Dna

Numerous hypotheses about how life on earth could have started can be found in the literature. In this article, we give an overview about the most widespread ones and try to point out which of them might have occurred on the primordial earth with highest probability from a chemical point of view. The idea that a very early stage of life was the "RNA world" encounters crucial problems concerning the formation of its building blocks and their stability in a prebiotic environment. Instead, it seems much more likely that a "peptide world" originated first and that RNA and DNA took up their part at a much later stage. It is shown that amino acids and peptides can be easily formed in a realistic primordial scenario and that these biomolecules can start chemical evolution without the help of RNA. The origin of biohomochirality seems strongly related to the most probable formation of the first peptides via the salt-induced peptide formation (SIPF) reaction.

Relicts and models of the RNA world

2005 ◽  
Vol 4 (1) ◽  
pp. 33-41 ◽  
Author(s):  
Kirsi Lehto ◽  
Alexey Karetnikov
Keyword(s):  
Rna World ◽  
Building Blocks ◽  
Life Forms ◽  
Molecular Fossils ◽  
Catalytic Rnas ◽  
Rna Catalysts ◽  
Metabolic Reactions ◽  
And Function ◽  
Mediated Catalysis

It is widely believed that the current DNA–RNA–protein-based life forms have evolved from preceding RNA–protein-based life forms, and these again, from mere RNA replicons. By rationale, it can be assumed that the early RNA replicons were fully heterotrophic in terms of obtaining all their building blocks from their environment. In the absence of protein catalysts, their essential life functions had to be mediated by simple functional structures and mechanisms, such as RNA secondary structures, RNA–RNA interactions and RNA-mediated catalysis, and possibly by catalytic minerals or clays. The central role of RNA catalysts in early life forms is supported by the fact that several catalytic RNAs still perform central biological functions in current life forms, and at least some of these may be derived as molecular relicts from the early RNA-based life. The RNA-catalysed metabolic reactions and molecular fossils are more conserved in the eukaryotic life forms than in the prokaryotes, suggesting that the linear eukaryote genomes may more closely resemble the structure and function of the early RNA replicons, than what do the circular prokaryote genomes. Present-day RNA viruses and viroids utilize ultimately simple life strategies, which may be similar to those used by the early RNA replicons. Thus, molecular and functional properties of viruses and viroids may be considered as examples or models of the structures and replication mechanisms, which might have been used for the replication of the early biopolymers.

scholarly journals Origin of the RNA world: The fate of nucleobases in warm little ponds

2017 ◽  
Vol 114 (43) ◽  
pp. 11327-11332 ◽  
Author(s):  
Ben K. D. Pearce ◽  
Ralph E. Pudritz ◽  
Dmitry A. Semenov ◽  
Thomas K. Henning
Keyword(s):  
Numerical Model ◽  
Prebiotic Chemistry ◽  
Rna World ◽  
Building Blocks ◽  
Interplanetary Dust ◽  
Global Ocean ◽  
Dust Particles ◽  
Early Earth ◽  
Interplanetary Dust Particles ◽  
Cellular Life

Before the origin of simple cellular life, the building blocks of RNA (nucleotides) had to form and polymerize in favorable environments on early Earth. At this time, meteorites and interplanetary dust particles delivered organics such as nucleobases (the characteristic molecules of nucleotides) to warm little ponds whose wet–dry cycles promoted rapid polymerization. We build a comprehensive numerical model for the evolution of nucleobases in warm little ponds leading to the emergence of the first nucleotides and RNA. We couple Earth’s early evolution with complex prebiotic chemistry in these environments. We find that RNA polymers must have emerged very quickly after the deposition of meteorites (less than a few years). Their constituent nucleobases were primarily meteoritic in origin and not from interplanetary dust particles. Ponds appeared as continents rose out of the early global ocean, but this increasing availability of “targets” for meteorites was offset by declining meteorite bombardment rates. Moreover, the rapid losses of nucleobases to pond seepage during wet periods, and to UV photodissociation during dry periods, mean that the synthesis of nucleotides and their polymerization into RNA occurred in just one to a few wet–dry cycles. Under these conditions, RNA polymers likely appeared before 4.17 billion years ago.

A review on the spontaneous formation of the building blocks of life and the generation of a set of hypotheses governing universal abiogenesis

2012 ◽  
Vol 12 (1) ◽  
pp. 39-44
Author(s):  
B. S. Palmer
Keyword(s):  
Liquid Water ◽  
Current Knowledge ◽  
Rna World ◽  
Building Blocks ◽  
Earth Model ◽  
Primitive Earth ◽  
Sequence Of Events ◽  
Life Itself ◽  
World Hypothesis ◽  
The Universe

AbstractThere have been a number of hypotheses regarding abiogenesis, the ‘Metabolism First’ model and the ‘RNA World Hypothesis’ are two such examples. All theories on abiogenesis make a set of unstated assumptions with regard to the elemental make up of life or only apply the theory to a primitive earth model. This paper reviews current knowledge from the myriad of observations from a variety of scientific disciplines and applies generally understood thermodynamic reasoning to explain the formation of molecules known to be used by life. These arguments are used in this paper to construct a set of new hypotheses which govern universal abiogenesis. The intention of this paper is to show by the application of our known laws of science that life is the end sequence of events of the fundamental forces which affect the entire universe. From these events a new hypotheses on abiogenesis can be formulated. The hypotheses proposed by this paper are incorporated in many of the current theories of abiogenesis, either assumed or accepted but very rarely stated or explained. The proposed set of five hypotheses are: (1) any celestial mass that has a body of liquid water and therefore has access to energy will form at least the building blocks of life, if not life itself. (2) The major component of any life form anywhere in the universe will be H2O. (3) Any organism, anywhere in the universe, will be carbon-based. (4) All life in the universe will be composed of nucleic acid based molecules as its code for life. (5) The cell is the universal unit of life. Throughout this paper the background to the formulation of these hypotheses is discussed, as is the explanation of why these hypotheses are universal and not limited to an application of a primitive earth model. This set of hypotheses is also testable as any investigation of a celestial body which contains liquid water (e.g. Europa) will quickly provide evidence to prove or refute the proposed theory.

scholarly journals Rethinking the tools of the RNA world

eLife ◽  
2018 ◽  
Vol 7 ◽  
Author(s):  
Antony Crisp ◽  
Thomas Carell
Keyword(s):  
Rna World ◽  
Building Blocks

An artificially evolved ribozyme can catalyse the synthesis of RNA by using trinucleotide triphosphates as building blocks.

scholarly journals The chemical origins of life and its early evolution: an introduction

2011 ◽  
Vol 366 (1580) ◽  
pp. 2853-2856 ◽  
Author(s):  
David M. J. Lilley ◽  
John Sutherland
Keyword(s):  
Nucleic Acids ◽  
Origin Of Life ◽  
Chemical Reactions ◽  
Rna World ◽  
Building Blocks ◽  
Transferase Activity ◽  
Peptidyl Transferase ◽  
Self Assembling ◽  
The Earth ◽  
The Origin Of Life

Can we look at contemporary biology and couple this with chemical insight to propose some plausible mechanisms for the origin of life on the planet? In what follows, we examine some promising chemical reactions by which the building blocks for nucleic acids might have been created about a billion years after the Earth formed. This could have led to self-assembling systems that were based on an all-RNA metabolism, where RNA is both catalytic and informational. We consider the breadth of RNA enzymes presently existing in biology, and to what extent these might have covered a wider range of chemistry in the RNA world. Ultimately, the RNA world would probably have given way to protein-based life quite quickly, and the origins of peptidyl transferase activity are discussed below.

Photochemical Evolution of Interstellar/Precometary Organic Material

1997 ◽  
Vol 161 ◽  
pp. 23-47 ◽  
Author(s):  
Louis J. Allamandola ◽  
Max P. Bernstein ◽  
Scott A. Sandford
Keyword(s):  
Origin Of Life ◽  
Building Blocks ◽  
Complex Species ◽  
Infrared Observations ◽  
Interstellar Ice ◽  
Polycyclic Aromatic ◽  
Ultraviolet Photolysis ◽  
The Origin Of Life ◽  
Simple Molecules ◽  
Complex Organic

AbstractInfrared observations, combined with realistic laboratory simulations, have revolutionized our understanding of interstellar ice and dust, the building blocks of comets. Since comets are thought to be a major source of the volatiles on the primative earth, their organic inventory is of central importance to questions concerning the origin of life. Ices in molecular clouds contain the very simple molecules H2O, CH3OH, CO, CO2, CH4, H2, and probably some NH3and H2CO, as well as more complex species including nitriles, ketones, and esters. The evidence for these, as well as carbonrich materials such as polycyclic aromatic hydrocarbons (PAHs), microdiamonds, and amorphous carbon is briefly reviewed. This is followed by a detailed summary of interstellar/precometary ice photochemical evolution based on laboratory studies of realistic polar ice analogs. Ultraviolet photolysis of these ices produces H2, H2CO, CO2, CO, CH4, HCO, and the moderately complex organic molecules: CH3CH2OH (ethanol), HC(= O)NH2(formamide), CH3C(= O)NH2(acetamide), R-CN (nitriles), and hexamethylenetetramine (HMT, C6H12N4), as well as more complex species including polyoxymethylene and related species (POMs), amides, and ketones. The ready formation of these organic species from simple starting mixtures, the ice chemistry that ensues when these ices are mildly warmed, plus the observation that the more complex refractory photoproducts show lipid-like behavior and readily self organize into droplets upon exposure to liquid water suggest that comets may have played an important role in the origin of life.

Laboratory and in-situ analysis of comet dust

1988 ◽  
Vol 46 ◽  
pp. 8-9
Author(s):  
D.E. Brownlee ◽  
A.L. Albee
Keyword(s):  
Electron Microscopy ◽  
Solar System ◽  
Laboratory Study ◽  
Isotopic Analysis ◽  
Building Blocks ◽  
Sem Analysis ◽  
Early Solar System ◽  
Cometary Material ◽  
Comet Dust

Comets are primitive, kilometer-sized bodies that formed in the outer regions of the solar system. Composed of ice and dust, comets are generally believed to be relic building blocks of the outer solar system that have been preserved at cryogenic temperatures since the formation of the Sun and planets. The analysis of cometary material is particularly important because the properties of cometary material provide direct information on the processes and environments that formed and influenced solid matter both in the early solar system and in the interstellar environments that preceded it.The first direct analyses of proven comet dust were made during the Soviet and European spacecraft encounters with Comet Halley in 1986. These missions carried time-of-flight mass spectrometers that measured mass spectra of individual micron and smaller particles. The Halley measurements were semi-quantitative but they showed that comet dust is a complex fine-grained mixture of silicates and organic material. A full understanding of comet dust will require detailed morphological, mineralogical, elemental and isotopic analysis at the finest possible scale. Electron microscopy and related microbeam techniques will play key roles in the analysis. The present and future of electron microscopy of comet samples involves laboratory study of micrometeorites collected in the stratosphere, in-situ SEM analysis of particles collected at a comet and laboratory study of samples collected from a comet and returned to the Earth for detailed study.

Cryo-TEM of amphiphilic polymer and amphiphile/polymer solutions

1993 ◽  
Vol 51 ◽  
pp. 876-877
Author(s):  
Yeshayahu Talmon
Keyword(s):  
Microstructural Characterization ◽  
Building Blocks ◽  
Quantitative Information ◽  
Physical Models ◽  
Specimen Preparation ◽  
Time Resolved ◽  
Temperature Changes ◽  
Temperature And Humidity ◽  
Microstructured Fluids ◽  
Air Streams

To achieve complete microstructural characterization of self-aggregating systems, one needs direct images in addition to quantitative information from non-imaging, e.g., scattering or Theological measurements, techniques. Cryo-TEM enables us to image fluid microstructures at better than one nanometer resolution, with minimal specimen preparation artifacts. Direct images are used to determine the “building blocks” of the fluid microstructure; these are used to build reliable physical models with which quantitative information from techniques such as small-angle x-ray or neutron scattering can be analyzed.To prepare vitrified specimens of microstructured fluids, we have developed the Controlled Environment Vitrification System (CEVS), that enables us to prepare samples under controlled temperature and humidity conditions, thus minimizing microstructural rearrangement due to volatile evaporation or temperature changes. The CEVS may be used to trigger on-the-grid processes to induce formation of new phases, or to study intermediate, transient structures during change of phase (“time-resolved cryo-TEM”). Recently we have developed a new CEVS, where temperature and humidity are controlled by continuous flow of a mixture of humidified and dry air streams.

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