scholarly journals Cis-regulation and sporogenic reversion frequency of a new mutable Anl allele in Petunia hybrida

Heredity ◽  
1985 ◽  
Vol 54 (3) ◽  
pp. 373-379 ◽  
Author(s):  
A G M Gerats ◽  
S P C Groot ◽  
F Bianchi
Keyword(s):  
Petunia Hybrida ◽  
Reversion Frequency ◽  
Cis Regulation

scholarly journals A pediatric brain tumor atlas of genes deregulated by somatic genomic rearrangement

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Yiqun Zhang ◽  
Fengju Chen ◽  
Lawrence A. Donehower ◽  
Michael E. Scheurer ◽  
Chad J. Creighton
Keyword(s):  
Brain Tumor ◽  
Brain Tumors ◽  
Tyrosine Kinases ◽  
Pediatric Brain Tumor ◽  
Pediatric Brain Tumors ◽  
Altered Expression ◽  
Critical Pathways ◽  
Cis Regulation ◽  
Or Gene ◽  
Pediatric Brain

AbstractThe global impact of somatic structural variants (SSVs) on gene expression in pediatric brain tumors has not been thoroughly characterised. Here, using whole-genome and RNA sequencing from 854 tumors of more than 30 different types from the Children’s Brain Tumor Tissue Consortium, we report the altered expression of hundreds of genes in association with the presence of nearby SSV breakpoints. SSV-mediated expression changes involve gene fusions, altered cis-regulation, or gene disruption. SSVs considerably extend the numbers of patients with tumors somatically altered for critical pathways, including receptor tyrosine kinases (KRAS, MET, EGFR, NF1), Rb pathway (CDK4), TERT, MYC family (MYC, MYCN, MYB), and HIPPO (NF2). Compared to initial tumors, progressive or recurrent tumors involve a distinct set of SSV-gene associations. High overall SSV burden associates with TP53 mutations, histone H3.3 gene H3F3C mutations, and the transcription of DNA damage response genes. Compared to adult cancers, pediatric brain tumors would involve a different set of genes with SSV-altered cis-regulation. Our comprehensive and pan-histology genomic analyses reveal SSVs to play a major role in shaping the transcriptome of pediatric brain tumors.

Natural abundances of 15N and 13C indicating physiological responses in Petunia hybrida to infection by longidorid nematodes and nepoviruses

Nematology ◽  
1999 ◽  
Vol 1 (3) ◽  
pp. 315-320 ◽  
Author(s):  
Roy Neilson ◽  
Linda L. Handley ◽  
David Robinson ◽  
Charlie M. Scrimgeour ◽  
Derek J.F. Brown
Keyword(s):  
Nitric Oxide ◽  
Virus Infection ◽  
Petunia Hybrida ◽  
Physiological Responses ◽  
Pr Proteins ◽  
Pathogen Infection ◽  
Infection Virale ◽  
Longidorus Elongatus ◽  
And Control ◽  
Xiphinema Diversicaudatum

Abstract The effects of a) systemic virus infection (arabis mosaic and tomato black ring nepoviruses), b) ectoparasitic nematode feeding (Xiphinema diversicaudatum and Longidorus elongatus) and c) a combination of virus infection and nematode feeding on the natural abundances of 13C(delta13C) and 15N(delta15N) of nitrogen-starved Petunia hybrida were studied. Pathogen-induced effects were not confined to sites of virus infection or nematode feeding. Those treatments with nematodes feeding on Petunia hosts and those with a combination of virus infection and nematode feeding resulted in a depletion of shoot and root 15N compared with controls. Virus-infected plants were more 15N-enriched than those fed upon by nematodes which, in turn, were more 15N-enriched than those with both nematode and virus in combination. Shoot delta13C values from infected treatments were not significantly different from controls. Although root delta13C was significantly different from controls in most treatments, absolute differences were small. Differences in delta15N between infected and control plants were probably caused by physiological responses to pathogen infection/feeding such as production of PR-proteins and/or release of nitric oxide. Le contenu naturel en 15N et 13C comme indicateur de la reaction de Petunia hybrida a l'infestation par les nematodes Longidorides et les nepovirus - La presente etude a porte sur l'influence i) d'une infection virale systemique (nepovirus de la mosaique Arabis et du cercle noir de la tomate), ii) d'une atteinte par des nematodes ectoparasites (Xiphinema diversicaudatum et Longidorus elongatus) et iii) d'une combinaison de deux types de pathogenes sur le contenu naturel en 13C(delta13C) et en 15N(delta15N) de Petunia hybrida deficients en azote. Les effets induits par ces organismes pathogenes ne sont pas limites aux sites de l'infection virale ou a ceux des attaques des nematodes. Compares aux temoins, les traitements comportant les seules attaques de nematodes et ceux comportant des attaques combinees des deux types de parasites provoquent une diminution du 15N des racines et des parties aeriennes. Les plants infectes par les virus avaient un taux en 15N plus eleve que ceux attaques par les nematodes, lesquels, en revanche, contenaient plus de 15N que les plants soumis simultanement aux deux types de parasites. Les taux de delta13C dans les parties aeriennes des plants soumis aux differentes attaques n'etaient pas significativement differents de ceux des temoins. Si, dans la plupart des traitements, les taux de delta13C dans les racines etaient significativement differents de ceux des temoins, ces differences restaient faibles en valeur absolue. Les differences dans les taux en delta15N entre plants infectes et temoins sont probablement la resultante de reactions physiologiques aux pathogenes, telles la production de proteines PR ou l'emission d'oxyde nitrique.

scholarly journals Cis-regulation of the L-type pyruvate kinase gene promoter by glucose, insulin and cyclic AMP

1992 ◽  
Vol 20 (8) ◽  
pp. 1871-1878 ◽  
Author(s):  
Marie-Odile Bergot ◽  
Maria-Jose M. Diaz-Guerra ◽  
Nathalie Puzenat ◽  
Michel Raymondjean ◽  
Axel Kahn
Keyword(s):  
Cyclic Amp ◽  
Pyruvate Kinase ◽  
Gene Promoter ◽  
Kinase Gene ◽  
Cis Regulation

Phytotropins. IV. Effect of Phytotropins on Cultured Plant Cells and Protoplasts

1982 ◽  
Vol 9 (3) ◽  
pp. 297 ◽  
Author(s):  
PJ Larkin ◽  
W Scowcroft ◽  
AE Geissler ◽  
GF Katekar
Keyword(s):  
Petunia Hybrida ◽  
Cultured Cells ◽  
Plant Cells ◽  
Dichlorophenoxyacetic Acid ◽  
Polar Transport ◽  
Suspension Cultured Cells ◽  
Specific Receptors ◽  
Nicotiana Debneyi ◽  
2,4 Dichlorophenoxyacetic Acid

The phytotropins l-(2'-carboxyphenyl)-3-phenylpropane-1,3-dione (CPP) and 5-(2-carboxyphenyl)- 3-phenylpyrazole (CPD) reduced the net efflux of radiolabel from suspension-cultured cells treated with [14C]2,4-dichlorophenoxyacetic acid when present at concentrations comparable to those that inhibit polar transport of auxins in bean petioles. These phytotropins stimulated division of protoplasts of both Nicotiana debneyi and Petunia hybrida at concentrations of exogenous auxins that were otherwise suboptimal for divisions. The results are consistent with the proposal that phytotropins interact with specific receptors to reduce auxin efflux, resulting in increased intracellular auxin concentrations.

scholarly journals Combinatorial Cis-regulation in Saccharomyces Species

2016 ◽  
Vol 6 (3) ◽  
pp. 653-667 ◽  
Author(s):  
Aaron T. Spivak ◽  
Gary D. Stormo
Keyword(s):  
Cis Regulation
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