Brownian Dynamics Simulations of Dendrimers under Elongational Flow: Bead−Rod Model with Hydrodynamic Interactions

Macromolecules ◽

10.1021/ma030088b ◽

2003 ◽

Vol 36 (18) ◽

pp. 6914-6924 ◽

Cited By ~ 23

Author(s):

Igor M. Neelov ◽

David B. Adolf

Keyword(s):

Brownian Dynamics ◽

Elongational Flow ◽

Hydrodynamic Interactions ◽

Rod Model ◽

Dynamics Simulations ◽

Brownian Dynamics Simulations

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Molecule-Centered Method for Accelerating the Calculation of Hydrodynamic Interactions in Brownian Dynamics Simulations Containing Many Flexible Biomolecules

Journal of Chemical Theory and Computation ◽

10.1021/ct400240w ◽

2013 ◽

Vol 9 (7) ◽

pp. 3224-3239 ◽

Cited By ~ 8

Author(s):

Adrian H. Elcock

Keyword(s):

Brownian Dynamics ◽

Hydrodynamic Interactions ◽

Dynamics Simulations ◽

Brownian Dynamics Simulations

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A generalized bead-rod model for Brownian dynamics simulations of wormlike chains under strong confinement

The Journal of Chemical Physics ◽

10.1063/1.2008233 ◽

2005 ◽

Vol 123 (8) ◽

pp. 084906 ◽

Cited By ~ 54

Author(s):

Jizeng Wang ◽

Huajian Gao

Keyword(s):

Brownian Dynamics ◽

Rod Model ◽

Dynamics Simulations ◽

Brownian Dynamics Simulations ◽

Strong Confinement

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An iterative method for hydrodynamic interactions in Brownian dynamics simulations of polymer dynamics

The Journal of Chemical Physics ◽

10.1063/1.4993218 ◽

2017 ◽

Vol 147 (2) ◽

pp. 024904 ◽

Cited By ~ 9

Author(s):

Linling Miao ◽

Charles D. Young ◽

Charles E. Sing

Keyword(s):

Iterative Method ◽

Brownian Dynamics ◽

Hydrodynamic Interactions ◽

Polymer Dynamics ◽

Dynamics Simulations ◽

Brownian Dynamics Simulations

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Brownian dynamics simulation of linear polymers under elongational flow: Bead–rod model with hydrodynamic interactions

The Journal of Chemical Physics ◽

10.1063/1.1493187 ◽

2002 ◽

Vol 117 (8) ◽

pp. 4030-4041 ◽

Cited By ~ 26

Author(s):

Igor M. Neelov ◽

David B. Adolf ◽

Alexey V. Lyulin ◽

Geoffrey R. Davies

Keyword(s):

Brownian Dynamics ◽

Elongational Flow ◽

Dynamics Simulation ◽

Hydrodynamic Interactions ◽

Linear Polymers ◽

Brownian Dynamics Simulation ◽

Rod Model

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Brownian dynamics simulations of the effects of hydrodynamic interactions on the polymer viscoelastic behavior

Polymer ◽

10.1016/s0032-3861(03)00152-6 ◽

2003 ◽

Vol 44 (9) ◽

pp. 2807-2815 ◽

Cited By ~ 3

Author(s):

D.-J. Yang ◽

Y.-H. Lin

Keyword(s):

Brownian Dynamics ◽

Viscoelastic Behavior ◽

Hydrodynamic Interactions ◽

Dynamics Simulations ◽

Brownian Dynamics Simulations

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Faculty Opinions recommendation of Absolute protein-protein association rate constants from flexible, coarse-grained Brownian dynamics simulations: the role of intermolecular hydrodynamic interactions in barnase-barstar association.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.6916959.7430054 ◽

2010 ◽

Author(s):

Dimitrios Morikis

Keyword(s):

Rate Constants ◽

Brownian Dynamics ◽

Hydrodynamic Interactions ◽

Coarse Grained ◽

Association Rate ◽

Protein Association ◽

Dynamics Simulations ◽

Brownian Dynamics Simulations ◽

Association Rate Constants

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Krylov subspace methods for computing hydrodynamic interactions in Brownian dynamics simulations

The Journal of Chemical Physics ◽

10.1063/1.4742347 ◽

2012 ◽

Vol 137 (6) ◽

pp. 064106 ◽

Cited By ~ 37

Author(s):

Tadashi Ando ◽

Edmond Chow ◽

Yousef Saad ◽

Jeffrey Skolnick

Keyword(s):

Brownian Dynamics ◽

Krylov Subspace ◽

Krylov Subspace Methods ◽

Hydrodynamic Interactions ◽

Subspace Methods ◽

Dynamics Simulations ◽

Brownian Dynamics Simulations

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Brownian dynamics simulations of bead-rod-chain in simple shear flow and elongational flow

Polymer ◽

10.1016/j.polymer.2003.07.012 ◽

2004 ◽

Vol 45 (4) ◽

pp. 1383-1389 ◽

Cited By ~ 44

Author(s):

S. Liu ◽

B. Ashok ◽

M. Muthukumar

Keyword(s):

Shear Flow ◽

Simple Shear ◽

Brownian Dynamics ◽

Elongational Flow ◽

Simple Shear Flow ◽

Dynamics Simulations ◽

Brownian Dynamics Simulations

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Atomic Detail Brownian Dynamics Simulations of Concentrated Protein Solutions with a Mean Field Treatment of Hydrodynamic Interactions

The Journal of Physical Chemistry B ◽

10.1021/jp212532h ◽

2012 ◽

Vol 116 (29) ◽

pp. 8523-8533 ◽

Cited By ~ 48

Author(s):

Paolo Mereghetti ◽

Rebecca C. Wade

Keyword(s):

Brownian Dynamics ◽

Mean Field ◽

Hydrodynamic Interactions ◽

Protein Solutions ◽

Dynamics Simulations ◽

Brownian Dynamics Simulations

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Thermally Fluctuating, Semiflexible Sheets in Simple Shear Flow

Soft Matter ◽

10.1039/d1sm01510a ◽

2022 ◽

Author(s):

Kevin S. Silmore ◽

Michael Strano ◽

James W. Swan

Keyword(s):

Shear Flow ◽

Simple Shear ◽

Brownian Dynamics ◽

Thermal Fluctuations ◽

Hydrodynamic Interactions ◽

Simple Shear Flow ◽

Bending Rigidity ◽

Dynamics Simulations ◽

Brownian Dynamics Simulations ◽

Shear Energy

We perform Brownian dynamics simulations of semiflexible colloidal sheets with hydrodynamic interactions and thermal fluctuations in shear flow. As a function of the ratio of bending rigidity to shear energy...

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