Non-Exponential Kinetics and a Complete Folding Pathway of an α-Helical Heteropeptide: Direct Observation and Comprehensive Molecular Dynamics

Gouri S. Jas; C. Russell Middaugh; Krzysztof Kuczera

doi:10.1021/jp410934g

Non-Exponential Kinetics and a Complete Folding Pathway of an α-Helical Heteropeptide: Direct Observation and Comprehensive Molecular Dynamics

The Journal of Physical Chemistry B ◽

10.1021/jp410934g ◽

2013 ◽

Vol 118 (2) ◽

pp. 639-647 ◽

Cited By ~ 7

Author(s):

Gouri S. Jas ◽

C. Russell Middaugh ◽

Krzysztof Kuczera

Keyword(s):

Molecular Dynamics ◽

Direct Observation ◽

Folding Pathway

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Faculty Opinions recommendation of Direct observation of chaperone-induced changes in a protein folding pathway.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1098435.554510 ◽

2007 ◽

Author(s):

C Hal Jones

Keyword(s):

Protein Folding ◽

Direct Observation ◽

Folding Pathway ◽

Induced Changes

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Direct observation of long chain enrichment in flow-induced nuclei from molecular dynamics simulations of bimodal blends

Soft Matter ◽

10.1039/d0sm01361g ◽

2021 ◽

Vol 17 (10) ◽

pp. 2872-2882

Author(s):

Muhammad Anwar ◽

Richard S. Graham

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Direct Observation ◽

Dynamics Simulations ◽

Long Chain ◽

Long Chains

Modelling of flow-induced nucleation in polymers suggest that long chains are enriched in nuclei, relative to their melt concentration.

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Direct observation of molecular dynamics in intense laser fields probed by pulsed gas electron diffraction

CLEO/Pacific Rim 2003. The 5th Pacific Rim Conference on Lasers and Electro-Optics (IEEE Cat. No.03TH8671) ◽

10.1109/cleopr.2003.1277285 ◽

2004 ◽

Author(s):

T. Okino ◽

K. Hoshina ◽

K. Yamanouchi

Keyword(s):

Molecular Dynamics ◽

Electron Diffraction ◽

Direct Observation ◽

Gas Electron Diffraction ◽

Intense Laser ◽

Intense Laser Fields ◽

Laser Fields

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Reentrant melting and multiple occupancy crystals of bounded potentials: Simple theory and direct observation by molecular dynamics simulations

Physical Review E ◽

10.1103/physreve.102.042102 ◽

2020 ◽

Vol 102 (4) ◽

Author(s):

I. Nikiteas ◽

D. M. Heyes

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Direct Observation ◽

Simple Theory ◽

Dynamics Simulations

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Traversing the folding pathway of proteins using temperature-aided cascade molecular dynamics with conformation-dependent charges

European Biophysics Journal ◽

10.1007/s00249-016-1115-4 ◽

2016 ◽

Vol 45 (5) ◽

pp. 463-482 ◽

Cited By ~ 3

Author(s):

Vinod Jani ◽

Uddhavesh Sonavane ◽

Rajendra Joshi

Keyword(s):

Molecular Dynamics ◽

Folding Pathway

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Detailed Microscopic Unfolding Pathways of an α-Helix and a β-Hairpin: Direct Observation and Molecular Dynamics

The Journal of Physical Chemistry B ◽

10.1021/jp500955z ◽

2014 ◽

Vol 118 (26) ◽

pp. 7233-7246 ◽

Cited By ~ 8

Author(s):

Gouri S. Jas ◽

Wendy A. Hegefeld ◽

C. Russell Middaugh ◽

Carey K. Johnson ◽

Krzysztof Kuczera

Keyword(s):

Molecular Dynamics ◽

Direct Observation ◽

Α Helix

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Direct Observation of Disrotatory Ring-Opening in Photoexcited Cyclobutene Using ab Initio Molecular Dynamics

Journal of the American Chemical Society ◽

10.1021/ja9943896 ◽

2000 ◽

Vol 122 (26) ◽

pp. 6299-6300 ◽

Cited By ~ 19

Author(s):

M. Ben-Nun ◽

Todd J. Martínez

Keyword(s):

Molecular Dynamics ◽

Ab Initio ◽

Direct Observation ◽

Ring Opening ◽

Ab Initio Molecular Dynamics

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Complete Coupled Binding–Folding Pathway of the Intrinsically Disordered Transcription Factor Protein Brinker Revealed by Molecular Dynamics Simulations and Markov State Modeling

Biochemistry ◽

10.1021/acs.biochem.8b00441 ◽

2018 ◽

Vol 57 (30) ◽

pp. 4404-4420 ◽

Cited By ~ 9

Author(s):

Andrew P. Collins ◽

Peter C. Anderson

Keyword(s):

Molecular Dynamics ◽

Transcription Factor ◽

Molecular Dynamics Simulations ◽

Folding Pathway ◽

Intrinsically Disordered ◽

Markov State ◽

Markov State Modeling ◽

Dynamics Simulations

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Direct Observation of Single Ostwald Ripening Processes by Molecular Dynamics Simulation

The Journal of Physical Chemistry B ◽

10.1021/jp806315e ◽

2008 ◽

Vol 112 (39) ◽

pp. 12408-12413 ◽

Cited By ~ 14

Author(s):

Thomas Kraska

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Direct Observation ◽

Ostwald Ripening ◽

Dynamics Simulation

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Direct observation of Bin/amphiphysin/Rvs (BAR) domain-induced membrane curvature by means of molecular dynamics simulations

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10.1073/pnas.0603917103 ◽

2006 ◽

Vol 103 (41) ◽

pp. 15068-15072 ◽

Cited By ~ 175

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P. D. Blood ◽

G. A. Voth

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulations ◽

Direct Observation ◽

Membrane Curvature ◽

Induced Membrane ◽

Bar Domain ◽

Dynamics Simulations

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