Charge Transfer in E. coli DNA Photolyase: Understanding Polarization and Stabilization Effects via QM/MM Simulations

2013 ◽  
Vol 117 (37) ◽  
pp. 10769-10778 ◽  
Author(s):  
Gesa Lüdemann ◽  
P. Benjamin Woiczikowski ◽  
Tomáš Kubař ◽  
Marcus Elstner ◽  
Thomas B. Steinbrecher
Biochemistry ◽  
1985 ◽  
Vol 24 (8) ◽  
pp. 1856-1861 ◽  
Author(s):  
Marilyn Schuman Jorns ◽  
Gwendolyn B. Sancar ◽  
Aziz Sancar
Keyword(s):  

2018 ◽  
Vol 54 (23) ◽  
pp. 2922-2925 ◽  
Author(s):  
Dan Wu ◽  
Jie Shen ◽  
Hongzhen Bai ◽  
Guocan Yu

Two supramolecular amphiphiles are fabricated through directional charge-transfer interactions, which self-assemble into nanofibers and nanoribbons. Due to the existence of galactose on their surface, these self-assemblies act as a cell glue to agglutinate E. coli, benefiting from multivalent interactions.


Author(s):  
I. E. Otuokere ◽  
J. G. Ohwimu ◽  
K. C. Amadi ◽  
C. O. Alisa ◽  
F. C. Nwadire ◽  
...  

Sulfathiazole (SFTZ) is an antibacterial drug that contains the organosulfur compounds. It is used as a short-acting sulfa drug. The metal complexes of sulfa-drug have gained considerable importance due to their pronounced biological activity. The sulfa-drugs have received great attention because of their therapeutic applications against bacterial infections. Mn(II) complex of sulfathiazole was synthesized by the reaction of sulfathiazole with MnCl2.4H2O. The Mn (II) complex was characterized based on UV, IR, 1H NMR Spectroscopy and x-ray powder diffraction. The electronic spectrum of the ligand showed intra charge transfer which was assigned to the chromophores present in the ligand, while that of the complex suggested intra ligand charge transfer (ILCT) and ligand to metal charge transfer (LMCT). In the IR spectrum of sulfathiazole, the N-H stretch of SO2NH appeared at 3255.23 cm-1. In the IR spectrum of the metal complex, this band was absent. This suggested the deprotonation of the N-H of SO2NH during the complexation reaction. This showed that sulfathiazole acted as a monodentate ligand. 1H NMR spectrum of [Mn(SFTZ)] complex showed the involvement of the nitrogen atom of SO2NH. The crystal structure of [Mn(SFTZ)] complex belongs to monoclinic system, space group P1, with cell parameters of a= 4.519Å, b = 8.704Å, c = 12.608Å, V = 493.5Å3, β = 95.69º. Molecular docking suggested that the ligand/complex bonded effectively with the E.coli and S.aureus because their global binding energies were negative. The binding interactions of ligand/complex with E. coli and S. aureus were predicted. Molecular docking predicted the feasibility of the biochemical reactions before experimental investigation. It was concluded that sulfathiazole behaved as a monodentate ligand towards Mn (II) ion. The binding energy and interaction of [Mn(SFTZ)] with E.coli and S. aureus have also shown that inhibition of the bacterial species is feasible. The mechanism of action of [Mn(SFTZ)] with E. coli and S. aureus is now well understood.


2005 ◽  
Vol 63 (2) ◽  
pp. 111-124 ◽  
Author(s):  
Wanmeng Mu ◽  
Dongfang Zhang ◽  
Lei Xu ◽  
Zhaofeng Luo ◽  
Yuzhen Wang
Keyword(s):  
E Coli ◽  

Biologia ◽  
2009 ◽  
Vol 64 (5) ◽  
Author(s):  
Mushtaq Hussain ◽  
Syeda Qamarunnissa ◽  
Saboohi Raza ◽  
Javed Qureshi ◽  
Abdul Wajid ◽  
...  

AbstractDNA photolyase is perhaps the most ancient and direct arsenal in curing the UV-induced dimers formed in the microbial genome. Out of two cofactors of the enzyme, catalytic and light harvesting, differences in the latter have provided basis for categorizing photolyases of prokaryotes as folate and deazaflavin types. In the present study, the homology modeling of DNA photolyase of Enterococcus faecalis was undertaken. The predicted models were structurally compared with the crystal structure coordinates of photolyases from Escherichia coli (folate type) and Anacystis nidulans (deazaflavin type). Discrepancies present in the multiple sequence alignment and tertiary structures, particularly at the light harvesting cofactor (methenyltetrahydrofolic acid, MTHF; 8-hydroxy-5-deazaflavin, 8-HDF) binding sites indicated the mechanistic nature of enterococcal photolyase. Concisely, despite the greater holistic homology with folate-type photolyase, enterococcal photolyase was characterized as deazaflavin-type. The presence of 8-HDF binding sites and groove architecture of substrate binding sites were also found supportive in this regard. The inter cofactor distance and/or orientation also implied to the efficient energy transfer in photolyase of Enterococcus in comparison with E. coli. In addition, we observed relatively high protein deformability in the enterococcal genome, which may favors the repair action of photolyase. The findings are expected to provide molecular insights into the difference in sunlight inactivation rate of two important fecal contamination indicators, namely Enterococcus and E. coli.


2010 ◽  
Vol 26 (4) ◽  
pp. 1612-1617 ◽  
Author(s):  
Yilun Luo ◽  
Steven Nartker ◽  
Hanna Miller ◽  
David Hochhalter ◽  
Michael Wiederoder ◽  
...  

RSC Advances ◽  
2016 ◽  
Vol 6 (29) ◽  
pp. 24218-24228 ◽  
Author(s):  
S. Zargari ◽  
R. Rahimi ◽  
A. Yousefi

Tin porphyrin intercalated between the TiO2–grphene nanocomposite. The inactivation of E. coli over the prepared compound was significantly increased via the interaction of tin porphyrin between the TiO2–graphene nanocomposite.


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