scholarly journals Bifurcated Hydrogen Bonding and Asymmetric Fluctuations in a Carbohydrate Crystal Studied via X-ray Crystallography and Computational Analysis

2013 ◽  
Vol 117 (25) ◽  
pp. 7546-7553 ◽  
Author(s):  
Xibing He ◽  
Elizabeth Hatcher ◽  
Lars Eriksson ◽  
Göran Widmalm ◽  
Alexander D. MacKerell
2012 ◽  
Vol 11 (4) ◽  
pp. 259-265
Author(s):  
Leticia Guerrero ◽  
Ruben Montalvo ◽  
Ignacio A. Rivero ◽  
Victor Barba

2009 ◽  
Vol 64 (11-12) ◽  
pp. 1542-s1554 ◽  
Author(s):  
Maria Georgiou ◽  
Simone Wöckel ◽  
Vera Konstanzer ◽  
Sebastian Dechert ◽  
Michael John ◽  
...  

A set of pyrazole-bridged bis(imidazolium) compounds [H3L1]X2 - [H3 L4]X2 (L1 = 3,5-bis[1-(tert-butyl)imidazolium-1-ylmethyl]-1H-pyrazole; L2 = 3,5-bis[1-(tert-butyl)imidazolium- 1-ylmethyl]-4-phenyl-1H-pyrazole; L3 = 3,5-bis[1-(1-adamantyl)imidazolium-1-ylmethyl]-1Hpyrazole; L4 = 3,5-bis[1-(1-adamantyl)imidazolium-1-ylmethyl]-4-phenyl-1H-pyrazole; X = Cl−, BF4 − or PF6 −) has been prepared, and three compounds have been characterized by X-ray crystallography. The unique [H3L4][H2L4](PF6)3 features a dimeric face-to-face arrangement of two molecules due to the involvement of both the pyrazole-NH and the imidazolium C2H in hydrogen bonding. [H3L1]X2 - [H3L4]X2 serve as precursors for silver(I) complexes with compartmental pyrazolate-bridged bis(NHC) ligands. The complexes have been readily prepared by the Ag2O route and feature either the known [(L1−4)2Ag4]2+ or the new [(H2L1)4Ag4]8+ motif, depending on the solvent for the reaction (MeCN or acetone). [(H2L1)4Ag4](PF6)8 contains a central (pzAg)4 ring with pendant imidazolium side arms. Upon further reaction with Ag2O in MeCN it was found to undergo transformation to the corresponding [(L1)2Ag4](PF6)2. All complexes have been thoroughly studied by NMR spectroscopy in solution, and preliminary luminescence data of [(H2L1)4Ag4](PF6)8 have been recorded


2004 ◽  
Vol 82 (2) ◽  
pp. 386-398 ◽  
Author(s):  
Dominic Laliberté ◽  
Thierry Maris ◽  
James D Wuest

Tetraphenylmethane, tetraphenylsilane, and simple derivatives with substituents that do not engage in hydrogen bonding typically crystallize as close-packed structures with essentially no space available for the inclusion of guests. In contrast, derivatives with hydrogen-bonding groups are known to favor the formation of open networks that include significant amounts of guests. To explore this phenomenon, we synthesized six new derivatives 5a–5e and 6a of tetraphenylmethane and tetraphenylsilane with urethane and urea groups at the para positions, crystallized the compounds, and determined their structures by X-ray crystallography. As expected, all six compounds crystallize to form porous three-dimensional hydrogen-bonded networks. In the case of tetraurea 5e, 66% of the volume of the crystals is accessible to guests, and guests can be exchanged in single crystals without loss of crystallinity. Of special note are: (i) the use of tetrakis(4-isocyanatophenyl)methane (1f) as a precursor for making enantiomerically pure tetraurethanes and tetraureas, including compounds 5b, 5c; and (ii) their subsequent crystallization to give porous chiral hydrogen-bonded networks. Such materials promise to include chiral guests enantioselectively and to be useful in the separation of racemates, asymmetric catalysis, and other applications.Key words: crystal engineering, molecular tectonics, hydrogen bonding, networks, porosity, urethanes, ureas, tetraphenylmethane, tetraphenylsilane.


CrystEngComm ◽  
2015 ◽  
Vol 17 (4) ◽  
pp. 877-888 ◽  
Author(s):  
Solhe F. Alshahateet ◽  
Mohan M. Bhadbhade ◽  
Roger Bishop ◽  
Marcia L. Scudder

X-ray crystallography shows that entirely different structures are produced when the dichlorodiquinoline derivative is crystallised from aprotic dimethylformamide or from protic solvents like methanol or acetic acid, demonstrating the importance of solvent choice in yielding alternative crystal forms.


1997 ◽  
Vol 50 (10) ◽  
pp. 1021 ◽  
Author(s):  
Graham Smith ◽  
Colin H. L. Kennard ◽  
Karl A. Byriel

The adducts of a series of compounds with urea (ur) have been prepared and their crystal structures determined by X-ray crystallography. These are the adducts with the unsaturated aliphatic acids fumaric acid [(fumaric acid)(ur)2] (1) and itaconic acid [(itaconic acid)(ur)] (2), and with cyanuric acid [(cyanuric acid)(ur)] (3). All structures have extensive hydrogen-bonding systems in which most of the urea donor and acceptor sites are involved.


Author(s):  
Sayuri Chong-Canto ◽  
Efrén V. García-Báez ◽  
Francisco J. Martínez-Martínez ◽  
Ángel Ramos-Organillo ◽  
Itzia I. Padilla-Martínez

A new cocrystal salt of metformin, an antidiabetic drug, and N,N’-(1,4-phenylene)dioxalamic acid, was synthesized by mechanochemical synthesis, purified by crystallization from solution and characterized by single X-ray crystallography. The structure revealed a salt-type cocrystal composed of one dicationic metformin unit, two monoanionic units of the acid and four water molecules namely H2Mf(HpOXA)2∙4H2O. X-ray powder, IR, 13C-CPMAS, thermal and BET adsorption-desorption analyses were performed to elucidate the structure of the molecular and supramolecurar structure of the anhydrous microcrystalline mesoporous solid H2Mf(HpOXA)2. The results suggest that their structures, conformation and hydrogen bonding schemes are very similar between them. To the best of our knowledge, the selective formation of the monoanion HpOXA⁻, as well as its structure in the solid, is herein reported for the first time. Regular O(-)∙∙∙C(), O(-)∙∙∙N+ and bifacial O(-)∙∙∙C()∙∙∙O(-) of n→* charge-assisted interactions are herein described in H2MfA cocrystal salts which could be responsible of the interactions of metformin in biologic systems. The results, support the participation of n→* charge-assisted interactions independently, and not just as a short contact imposed by the geometric constraint due to the hydrogen bonding patterns.


2019 ◽  
Vol 63 (4) ◽  
pp. 1528-1543 ◽  
Author(s):  
Mathieu Rappas ◽  
Ammar A. E. Ali ◽  
Kirstie A. Bennett ◽  
Jason D. Brown ◽  
Sarah J. Bucknell ◽  
...  

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