scholarly journals Exploring the Diffusion of Molecular Oxygen in the Red Fluorescent Protein mCherry Using Explicit Oxygen Molecular Dynamics Simulations

2013 ◽  
Vol 117 (8) ◽  
pp. 2247-2253 ◽  
Author(s):  
Chola K. Regmi ◽  
Yuba R. Bhandari ◽  
Bernard S. Gerstman ◽  
Prem P. Chapagain
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulations ◽  
Molecular Oxygen ◽  
Fluorescent Protein ◽  
Red Fluorescent Protein ◽  
Dynamics Simulations

Cyan Fluorescent Protein: Molecular Dynamics, Simulations, and Electronic Absorption Spectrum

2005 ◽  
Vol 109 (50) ◽  
pp. 24121-24133 ◽  
Author(s):  
Isabelle Demachy ◽  
Jacqueline Ridard ◽  
Hélène Laguitton-Pasquier ◽  
Elodie Durnerin ◽  
Germain Vallverdu ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Absorption Spectrum ◽  
Electronic Absorption Spectrum ◽  
Molecular Dynamics Simulations ◽  
Electronic Absorption ◽  
Fluorescent Protein ◽  
Cyan Fluorescent Protein ◽  
Dynamics Simulations ◽  
Protein Molecular Dynamics

scholarly journals Using Molecular Dynamics Simulations to Understand IR Spectroscopy Results in Green Fluorescent Protein

2020 ◽  
Vol 118 (3) ◽  
pp. 143a-144a
Author(s):  
Nia Huggins ◽  
Tracey Ng ◽  
Nicole Cruz ◽  
Scott H. Brewer ◽  
Christine M. Phillips-Piro ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Green Fluorescent Protein ◽  
Ir Spectroscopy ◽  
Molecular Dynamics Simulations ◽  
Fluorescent Protein ◽  
Dynamics Simulations ◽  
Green Fluorescent

scholarly journals Ultrafast action chemistry in slow motion: atomistic description of the excitation and fluorescence processes in an archetypal fluorescent protein

2018 ◽  
Vol 20 (16) ◽  
pp. 11067-11080 ◽  
Author(s):  
Pau Armengol ◽  
Lasse Spörkel ◽  
Ricard Gelabert ◽  
Miquel Moreno ◽  
Walter Thiel ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Proton Transfer ◽  
Molecular Dynamics Simulations ◽  
Fluorescence Spectrum ◽  
Fluorescent Protein ◽  
Slow Motion ◽  
Time Dependent ◽  
Dynamics Simulations

QM/MM molecular dynamics simulations allow understanding the time dependent fluorescence spectrum of a GFP mutant with ultrafast proton-transfer.

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