The Structural Role of Mg2+ Ions in a Class I RNA Polymerase Ribozyme: A Molecular Simulation Study

Jacopo Sgrignani; Alessandra Magistrato

doi:10.1021/jp206475d

The Structural Role of Mg2+ Ions in a Class I RNA Polymerase Ribozyme: A Molecular Simulation Study

The Journal of Physical Chemistry B ◽

10.1021/jp206475d ◽

2012 ◽

Vol 116 (7) ◽

pp. 2259-2268 ◽

Cited By ~ 33

Author(s):

Jacopo Sgrignani ◽

Alessandra Magistrato

Keyword(s):

Rna Polymerase ◽

Molecular Simulation ◽

Simulation Study ◽

Class I ◽

Structural Role

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Molecular simulation study of role of polymer–particle interactions in the strain-dependent viscoelasticity of elastomers (Payne effect)

The Journal of Chemical Physics ◽

10.1063/1.4894502 ◽

2014 ◽

Vol 141 (10) ◽

pp. 104901 ◽

Cited By ~ 19

Author(s):

Yulong Chen ◽

Ziwei Li ◽

Shipeng Wen ◽

Qingyuan Yang ◽

Liqun Zhang ◽

...

Keyword(s):

Molecular Simulation ◽

Simulation Study ◽

Polymer Particle ◽

Particle Interactions ◽

Payne Effect ◽

Strain Dependent

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A molecular simulation study on the role of ion sizes and dielectric images in near-surface ion distribution far from the strong coupling limit

The Journal of Chemical Physics ◽

10.1063/1.4729311 ◽

2012 ◽

Vol 136 (23) ◽

pp. 234701 ◽

Cited By ~ 8

Author(s):

Zhi-yong Wang ◽

Yu-qiang Ma

Keyword(s):

Molecular Simulation ◽

Strong Coupling ◽

Simulation Study ◽

Strong Coupling Limit ◽

Ion Distribution ◽

Near Surface

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Role of lipid composition on the structural and mechanical features of axonal membranes: a molecular simulation study

Scientific Reports ◽

10.1038/s41598-019-44318-9 ◽

2019 ◽

Vol 9 (1) ◽

Cited By ~ 9

Author(s):

Marzieh Saeedimasine ◽

Annaclaudia Montanino ◽

Svein Kleiven ◽

Alessandra Villa

Keyword(s):

Molecular Simulation ◽

Simulation Study ◽

Lipid Composition

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Molecular Simulation Study of Separation of CO2 from Alkanes Using Metal-Organic Frameworks

The Journal of Physical Chemistry B ◽

10.1021/jp064376w ◽

2006 ◽

Vol 0 (0) ◽

pp. 0-0

Author(s):

S. Wang ◽

Q. Yang ◽

C. Zhong

Keyword(s):

Molecular Simulation ◽

Simulation Study ◽

Metal Organic Frameworks ◽

Metal Organic ◽

Separation Of Co2

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The Role of Class I PI3K in Cell Migration

Targeted Protein Database ◽

10.2970/tpdb.2008.160 ◽

2008 ◽

Author(s):

Lindsay Davidson

Keyword(s):

Cell Migration ◽

Class I

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Faculty Opinions recommendation of Class I negative CD8 T cells reveal the confounding role of peptide-transfer onto CD8 T cells stimulated with soluble H2-Kb molecules.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1008016.138959 ◽

2002 ◽

Author(s):

Nick Gascoigne

Keyword(s):

T Cells ◽

Cd8 T Cells ◽

Class I

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Faculty Opinions recommendation of Reconciling the "old" and "new" views of protein allostery: a molecular simulation study of chemotaxis Y protein (CheY).

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1014443.371913 ◽

2006 ◽

Author(s):

George Ordal

Keyword(s):

Molecular Simulation ◽

Simulation Study ◽

Protein Allostery

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Faculty Opinions recommendation of Potential structural role of non-coding and coding RNAs in the organization of the cytoskeleton at the vegetal cortex of Xenopus oocytes.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1027434.328538 ◽

2005 ◽

Author(s):

Beat Suter

Keyword(s):

Xenopus Oocytes ◽

Structural Role ◽

Vegetal Cortex

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Faculty Opinions recommendation of Structural role of Sfi1p-centrin filaments in budding yeast spindle pole body duplication.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1033701.388954 ◽

2006 ◽

Author(s):

Mark Rose

Keyword(s):

Budding Yeast ◽

Spindle Pole Body ◽

Spindle Pole ◽

Structural Role ◽

Pole Body

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Faculty Opinions recommendation of The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.14223956.15738056 ◽

2012 ◽

Author(s):

Janet Braam

Keyword(s):

Rna Polymerase ◽

Noncoding Rnas

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