Electronic Structure of Cofactor−Substrate Reactant Complex Involved in the Methyl Transfer Reaction Catalyzed by Cobalamin-Dependent Methionine Synthase

2011 ◽  
Vol 115 (20) ◽  
pp. 6722-6731 ◽  
Author(s):  
Neeraj Kumar ◽  
Maria Jaworska ◽  
Piotr Lodowski ◽  
Manoj Kumar ◽  
Pawel M. Kozlowski
2016 ◽  
Vol 18 (34) ◽  
pp. 24033-24042 ◽  
Author(s):  
David Adrian Saez ◽  
Stefan Vogt-Geisse ◽  
Ricardo Inostroza-Rivera ◽  
Tomáš Kubař ◽  
Marcus Elstner ◽  
...  

The methyl transfer reaction mechanism in different molecular environments were studied by electronic structure methods and QM/MM molecular dynamics simulations.


2015 ◽  
Vol 6 (1) ◽  
Author(s):  
Alhosna Benjdia ◽  
Stéphane Pierre ◽  
Carmen Gherasim ◽  
Alain Guillot ◽  
Manon Carmona ◽  
...  

2018 ◽  
Vol 74 (1) ◽  
pp. 41-51
Author(s):  
Kazuhiro Yamada ◽  
Markos Koutmos

Methyl transfer between methyltetrahydrofolate and corrinoid molecules is a key reaction in biology that is catalyzed by a number of enzymes in many prokaryotic and eukaryotic organisms. One classic example of such an enzyme is cobalamin-dependent methionine synthase (MS). MS is a large modular protein that utilizes an SN2-type mechanism to catalyze the chemically challenging methyl transfer from the tertiary amine (N5) of methyltetrahydrofolate to homocysteine in order to form methionine. Despite over half a century of study, many questions remain about how folate-dependent methyltransferases, and MS in particular, function. Here, the structure of the folate-binding (Fol) domain of MS fromThermus thermophilusis reported in the presence and absence of methyltetrahydrofolate. It is found that the methyltetrahydrofolate-binding environment is similar to those of previously described methyltransferases, highlighting the conserved role of this domain in binding, and perhaps activating, the methyltetrahydrofolate substrate. These structural studies further reveal a new distinct and uncharacterized topology in the C-terminal region of MS Fol domains. Furthermore, it is found that in contrast to the canonical TIM-barrel β8α8fold found in all other folate-binding domains, MS Fol domains exhibit a unique β8α7fold. It is posited that these structural differences are important for MS function.


2011 ◽  
Vol 368 (1) ◽  
pp. 194-199 ◽  
Author(s):  
Ling Pan ◽  
Keishiro Tahara ◽  
Takahiro Masuko ◽  
Yoshio Hisaeda

2009 ◽  
Vol 38 (1) ◽  
pp. 26-27 ◽  
Author(s):  
Ling Pan ◽  
Hisashi Shimakoshi ◽  
Yoshio Hisaeda

2021 ◽  
Vol 17 (11) ◽  
pp. e1010052
Author(s):  
Chu Wang ◽  
Christian Nehls ◽  
Dirk Baabe ◽  
Olaf Burghaus ◽  
Robert Hurwitz ◽  
...  

The methyltransferase FliB posttranslationally modifies surface-exposed ɛ-N-lysine residues of flagellin, the protomer of the flagellar filament in Salmonella enterica (S. enterica). Flagellin methylation, reported originally in 1959, was recently shown to enhance host cell adhesion and invasion by increasing the flagellar hydrophobicity. The role of FliB in this process, however, remained enigmatic. In this study, we investigated the properties and mechanisms of FliB from S. enterica in vivo and in vitro. We show that FliB is an S-adenosylmethionine (SAM) dependent methyltransferase, forming a membrane associated oligomer that modifies flagellin in the bacterial cytosol. Using X-band electron paramagnetic resonance (EPR) spectroscopy, zero-field 57Fe Mössbauer spectroscopy, methylation assays and chromatography coupled mass spectrometry (MS) analysis, we further found that FliB contains an oxygen sensitive [4Fe-4S] cluster that is essential for the methyl transfer reaction and might mediate a radical mechanism. Our data indicate that the [4Fe-4S] cluster is coordinated by a cysteine rich motif in FliB that is highly conserved among multiple genera of the Enterobacteriaceae family.


ChemInform ◽  
2006 ◽  
Vol 37 (17) ◽  
Author(s):  
Mickael Huiban ◽  
Aline Huet ◽  
Louisa Barre ◽  
Franck Sobrio ◽  
Eric Fouquet ◽  
...  

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