scholarly journals Collagen I Weakly Interacts with the β-Sheets of β2-Microglobulin and Enhances Conformational Exchange To Induce Amyloid Formation

2019 ◽  
Vol 142 (3) ◽  
pp. 1321-1331
Author(s):  
Cody L. Hoop ◽  
Jie Zhu ◽  
Shibani Bhattacharya ◽  
Caitlyn A. Tobita ◽  
Sheena E. Radford ◽  
...  
2019 ◽  
Author(s):  
Cody L. Hoop ◽  
Jie Zhu ◽  
Shibani Bhattacharya ◽  
Caitlyn A. Tobita ◽  
Sheena E. Radford ◽  
...  

ABSTRACTAmyloidogenesis is significant in both protein function and pathology. Amyloid formation of folded, globular proteins is commonly initiated by partial unfolding. However, how this unfolding event is triggered for proteins that are otherwise stable in their native environments is not well understood. The accumulation of the immunoglobulin protein β2-microglobulin (β2m) into amyloid plaques in the joints of long-term hemodialysis patients is the hallmark of Dialysis Related Amyloidosis (DRA). While β2m does not form amyloid unassisted near neutral pH in vitro, the localization of β2m deposits to joint spaces suggests a role for the local extracellular matrix (ECM) proteins, specifically collagens, in promoting amyloid formation. Indeed, collagen and other ECM components have been observed to facilitate β2m amyloid formation, but the large size and anisotropy of the complex, combined with the low affinity of these interactions, has limited atomic-level elucidation of the amyloid-promoting mechanism by these molecules. Using solution NMR approaches that uniquely probe weak interactions and large complexes, we are able to derive binding interfaces for collagen I on β2m and detect collagen I-induced µs–ms timescale dynamics in the β2m backbone. By combining solution NMR relaxation methods and 15N-dark state exchange saturation transfer experiments, we propose a model in which weak, multimodal collagen I–β2m interactions promote exchange with a minor population of an amyloid-competent species to induce fibrillogenesis. The results portray the intimate role of the environment in switching an innocuous protein into an amyloid-competent state, rationalizing the localization of amyloid deposits in DRA.


Biochemistry ◽  
2020 ◽  
Vol 59 (10) ◽  
pp. 1093-1103 ◽  
Author(s):  
Tyler M. Marcinko ◽  
Thomas Drews ◽  
Tianying Liu ◽  
Richard W. Vachet
Keyword(s):  

Biochemistry ◽  
2005 ◽  
Vol 44 (11) ◽  
pp. 4397-4407 ◽  
Author(s):  
Niels H. H. Heegaard ◽  
Thomas J. D. Jørgensen ◽  
Noémi Rozlosnik ◽  
Dorthe B. Corlin ◽  
Jesper S. Pedersen ◽  
...  

2020 ◽  
Vol 21 (21) ◽  
pp. 8207
Author(s):  
Yi-Cong Luo ◽  
Pu Jing

Accumulation of amyloid fibrils in organisms accompanies many diseases. Natural extracts offer an alternative strategy to control the process with potentially fewer side effects. In this study, the inhibition of C-phycocyanin from Spirulina sp. on amyloid formation of bovine serum albumin (BSA) during a 21-day incubation was investigated using fluorescence and circular dichroism (CD), and mechanisms were explored via kinetic fitting and molecular docking. C-phycocyanin (0–50 µg/mL) hindered the amyloid formation process of BSA with increased half-lives (12.43–17.73 days) based on fluorescence intensity. A kinetic model was built and showed that the k1 decreased from 1.820 × 10−2 d−1 to 2.62 × 10−3 d−1 with the increase of C-phycocyanin, while k2 showed no changes, indicating that the inhibition of BSA fibrillation by C-phycocyanin occurred in a spontaneous process instead of self-catalyzed one. CD results show that C-phycocyanin inhibited conformational conversion (α-helices and β-sheets) of BSA from day 6 to day 18. Molecular docking suggested that C-phycocyanin may hinder BSA fibrillation by hydrogen-bonding > 6 of 27 α-helices of BSA in a gomphosis-like structure, but the unblocked BSA α-helices might follow the self-catalytic process subsequently.


Biochemistry ◽  
2019 ◽  
Vol 58 (49) ◽  
pp. 4925-4934
Author(s):  
Hiroya Muta ◽  
Masatomo So ◽  
Kazumasa Sakurai ◽  
Jozsef Kardos ◽  
Hironobu Naiki ◽  
...  

Biochemistry ◽  
2000 ◽  
Vol 39 (30) ◽  
pp. 8735-8746 ◽  
Author(s):  
Victoria J. McParland ◽  
Neil M. Kad ◽  
Arnout P. Kalverda ◽  
Anthony Brown ◽  
Patricia Kirwin-Jones ◽  
...  

Biochemistry ◽  
2006 ◽  
Vol 45 (7) ◽  
pp. 2311-2321 ◽  
Author(s):  
Sarah L. Myers ◽  
Susan Jones ◽  
Thomas R. Jahn ◽  
Isobel J. Morten ◽  
Glenys A. Tennent ◽  
...  

Biology ◽  
2021 ◽  
Vol 10 (11) ◽  
pp. 1197
Author(s):  
Éva Bulyáki ◽  
Judit Kun ◽  
Tamás Molnár ◽  
Alexandra Papp ◽  
András Micsonai ◽  
...  

β2-microglobulin (β2m), the light chain of the MHC-I complex, is associated with dialysis-related amyloidosis (DRA). Recently, a hereditary systemic amyloidosis was discovered, caused by a naturally occurring D76N β2m variant, which showed a structure remarkably similar to the wild-type (WT) protein, albeit with decreased thermodynamic stability and increased amyloidogenicity. Here, we investigated the role of the D76N mutation in the amyloid formation of β2m by point mutations affecting the Asp76-Lys41 ion-pair of WT β2m and the charge cluster on Asp38. Using a variety of biophysical techniques, we investigated the conformational stability and partial unfolding of the native state of the variants, as well as their amyloidogenic propensity and the stability of amyloid fibrils under various conditions. Furthermore, we studied the intermolecular interactions of WT and mutant proteins with various binding partners that might have in vivo relevance. We found that, relative to WT β2m, the exceptional amyloidogenicity of the pathogenic D76N β2m variant is realized by the deleterious synergy of diverse effects of destabilized native structure, higher sensitivity to negatively charged amphiphilic molecules (e.g., lipids) and polyphosphate, more effective fibril nucleation, higher conformational stability of fibrils, and elevated affinity for extracellular components, including extracellular matrix proteins.


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