scholarly journals Combined Use of Residual Dipolar Couplings and Solution X-ray Scattering To Rapidly Probe Rigid-Body Conformational Transitions in a Non-phosphorylatable Active-Site Mutant of the 128 kDa Enzyme I Dimer

2011 ◽  
Vol 133 (3) ◽  
pp. 424-427 ◽  
Author(s):  
Yuki Takayama ◽  
Charles D. Schwieters ◽  
Alexander Grishaev ◽  
Rodolfo Ghirlando ◽  
G. Marius Clore
2010 ◽  
Vol 132 (37) ◽  
pp. 13026-13045 ◽  
Author(s):  
Charles D. Schwieters ◽  
Jeong-Yong Suh ◽  
Alexander Grishaev ◽  
Rodolfo Ghirlando ◽  
Yuki Takayama ◽  
...  

2005 ◽  
Vol 102 (47) ◽  
pp. 17002-17007 ◽  
Author(s):  
P. Bernado ◽  
L. Blanchard ◽  
P. Timmins ◽  
D. Marion ◽  
R. W. H. Ruigrok ◽  
...  

2015 ◽  
Vol 112 (37) ◽  
pp. 11565-11570 ◽  
Author(s):  
Vincenzo Venditti ◽  
Charles D. Schwieters ◽  
Alexander Grishaev ◽  
G. Marius Clore

Enzyme I (EI) is the first component in the bacterial phosphotransferase system, a signal transduction pathway in which phosphoryl transfer through a series of bimolecular protein–protein interactions is coupled to sugar transport across the membrane. EI is a multidomain, 128-kDa homodimer that has been shown to exist in two conformational states related to one another by two large (50–90°) rigid body domain reorientations. The open conformation of apo EI allows phosphoryl transfer from His189 located in the N-terminal domain α/β (EINα/β) subdomain to the downstream protein partner bound to the EINα subdomain. The closed conformation, observed in a trapped phosphoryl transfer intermediate, brings the EINα/β subdomain into close proximity to the C-terminal dimerization domain (EIC), thereby permitting in-line phosphoryl transfer from phosphoenolpyruvate (PEP) bound to EIC to His189. Here, we investigate the solution conformation of a complex of an active site mutant of EI (H189A) with PEP. Simulated annealing refinement driven simultaneously by solution small angle X-ray scattering and NMR residual dipolar coupling data demonstrates unambiguously that the EI(H189A)–PEP complex exists in a dynamic equilibrium between two approximately equally populated conformational states, one corresponding to the closed structure and the other to a partially closed species. The latter likely represents an intermediate in the open-to-closed transition.


2009 ◽  
Vol 1788 (6) ◽  
pp. 1387-1397 ◽  
Author(s):  
Jianjun Pan ◽  
D. Peter Tieleman ◽  
John F. Nagle ◽  
Norbert Kučerka ◽  
Stephanie Tristram-Nagle

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Catarina S. Tomé ◽  
Raquel R. Lopes ◽  
Pedro M. F. Sousa ◽  
Mariana P. Amaro ◽  
João Leandro ◽  
...  

Abstract Human phenylalanine hydroxylase (hPAH) hydroxylates l-phenylalanine (l-Phe) to l-tyrosine, a precursor for neurotransmitter biosynthesis. Phenylketonuria (PKU), caused by mutations in PAH that impair PAH function, leads to neurological impairment when untreated. Understanding the hPAH structural and regulatory properties is essential to outline PKU pathophysiological mechanisms. Each hPAH monomer comprises an N-terminal regulatory, a central catalytic and a C-terminal oligomerisation domain. To maintain physiological l-Phe levels, hPAH employs complex regulatory mechanisms. Resting PAH adopts an auto-inhibited conformation where regulatory domains block access to the active site. l-Phe-mediated allosteric activation induces a repositioning of the regulatory domains. Since a structure of activated wild-type hPAH is lacking, we addressed hPAH l-Phe-mediated conformational changes and report the first solution structure of the allosterically activated state. Our solution structures obtained by small-angle X-ray scattering support a tetramer with distorted P222 symmetry, where catalytic and oligomerisation domains form a core from which regulatory domains protrude, positioning themselves close to the active site entrance in the absence of l-Phe. Binding of l-Phe induces a large movement and dimerisation of regulatory domains, exposing the active site. Activated hPAH is more resistant to proteolytic cleavage and thermal denaturation, suggesting that the association of regulatory domains stabilises hPAH.


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