Proton Transport through the Influenza A M2 Channel: Three-Dimensional Reference Interaction Site Model Study

Saree Phongphanphanee; Thanyada Rungrotmongkol; Norio Yoshida; Supot Hannongbua; Fumio Hirata

doi:10.1021/ja1027293

Proton Transport through the Influenza A M2 Channel: Three-Dimensional Reference Interaction Site Model Study

Journal of the American Chemical Society ◽

10.1021/ja1027293 ◽

2010 ◽

Vol 132 (28) ◽

pp. 9782-9788 ◽

Cited By ~ 38

Author(s):

Saree Phongphanphanee ◽

Thanyada Rungrotmongkol ◽

Norio Yoshida ◽

Supot Hannongbua ◽

Fumio Hirata

Keyword(s):

Proton Transport ◽

Influenza A ◽

Three Dimensional ◽

Interaction Site ◽

Site Model ◽

Model Study ◽

Reference Interaction Site

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Comparison of DNA hydration patterns obtained using two distinct computational methods, molecular dynamics simulation and three-dimensional reference interaction site model theory

The Journal of Chemical Physics ◽

10.1063/1.2904865 ◽

2008 ◽

Vol 128 (18) ◽

pp. 185102 ◽

Cited By ~ 12

Author(s):

Yoshiteru Yonetani ◽

Yutaka Maruyama ◽

Fumio Hirata ◽

Hidetoshi Kono

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Computational Methods ◽

Model Theory ◽

Three Dimensional ◽

Dynamics Simulation ◽

Interaction Site ◽

Site Model ◽

Dna Hydration ◽

Reference Interaction Site

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Solvation free-energy pressure corrections in the three dimensional reference interaction site model

The Journal of Chemical Physics ◽

10.1063/1.4935065 ◽

2015 ◽

Vol 143 (18) ◽

pp. 184116 ◽

Cited By ~ 38

Author(s):

Volodymyr Sergiievskyi ◽

Guillaume Jeanmairet ◽

Maximilien Levesque ◽

Daniel Borgis

Keyword(s):

Free Energy ◽

Three Dimensional ◽

Solvation Free Energy ◽

Interaction Site ◽

Site Model ◽

Reference Interaction Site

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Development of a solvent-polarizable three-dimensional reference interaction-site model theory

The Journal of Chemical Physics ◽

10.1063/5.0004173 ◽

2020 ◽

Vol 152 (11) ◽

pp. 114108 ◽

Cited By ~ 1

Author(s):

Norio Yoshida ◽

Tsuyoshi Yamaguchi

Keyword(s):

Model Theory ◽

Three Dimensional ◽

Interaction Site ◽

Site Model ◽

Reference Interaction Site

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Theoretical study for partial molar volume of amino acids and polypeptides by the three-dimensional reference interaction site model

The Journal of Chemical Physics ◽

10.1063/1.1369138 ◽

2001 ◽

Vol 114 (21) ◽

pp. 9506-9511 ◽

Cited By ~ 66

Author(s):

Yuichi Harano ◽

Takashi Imai ◽

Andriy Kovalenko ◽

Masahiro Kinoshita ◽

Fumio Hirata

Keyword(s):

Amino Acids ◽

Molar Volume ◽

Partial Molar Volume ◽

Theoretical Study ◽

Three Dimensional ◽

Interaction Site ◽

Site Model ◽

Reference Interaction Site

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Reference interaction site model study of self-aggregating cyanine dyes

The Journal of Chemical Physics ◽

10.1063/1.3211948 ◽

2009 ◽

Vol 131 (7) ◽

pp. 074503 ◽

Cited By ~ 24

Author(s):

Gennady N. Chuev ◽

Maxim V. Fedorov

Keyword(s):

Cyanine Dyes ◽

Interaction Site ◽

Site Model ◽

Model Study ◽

Reference Interaction Site

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Percolation behavior of long permeable objects: A reference interaction-site-model study

Physical Review B ◽

10.1103/physrevb.40.353 ◽

1989 ◽

Vol 40 (1) ◽

pp. 353-360 ◽

Cited By ~ 23

Author(s):

Daniel Lara ◽

Fernando Vericat

Keyword(s):

Interaction Site ◽

Site Model ◽

Model Study ◽

Percolation Behavior ◽

Reference Interaction Site

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Solution of three-dimensional reference interaction site model and hypernetted chain equations for simple point charge water by modified method of direct inversion in iterative subspace

Journal of Computational Chemistry ◽

10.1002/(sici)1096-987x(19990715)20:9<928::aid-jcc4>3.0.co;2-x ◽

1999 ◽

Vol 20 (9) ◽

pp. 928-936 ◽

Cited By ~ 127

Author(s):

Andriy Kovalenko ◽

Seiichiro Ten-no ◽

Fumio Hirata

Keyword(s):

Point Charge ◽

Three Dimensional ◽

Simple Point ◽

Interaction Site ◽

Site Model ◽

Direct Inversion ◽

Modified Method ◽

Hypernetted Chain ◽

Reference Interaction Site

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Erratum: “Development of a solvent-polarizable three-dimensional reference interaction-site model theory” [J. Chem. Phys. 152, 114108 (2020)]

The Journal of Chemical Physics ◽

10.1063/5.0010622 ◽

2020 ◽

Vol 152 (18) ◽

pp. 189904

Author(s):

Norio Yoshida ◽

Tsuyoshi Yamaguchi

Keyword(s):

Model Theory ◽

Three Dimensional ◽

Chem Phys ◽

Interaction Site ◽

Site Model ◽

Reference Interaction Site

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Efficient implementation of the three-dimensional reference interaction site model method in the fragment molecular orbital method

The Journal of Chemical Physics ◽

10.1063/1.4879795 ◽

2014 ◽

Vol 140 (21) ◽

pp. 214118 ◽

Cited By ~ 22

Author(s):

Norio Yoshida

Keyword(s):

Molecular Orbital ◽

Three Dimensional ◽

Efficient Implementation ◽

Orbital Method ◽

Molecular Orbital Method ◽

Interaction Site ◽

Fragment Molecular Orbital ◽

Site Model ◽

Model Method ◽

Reference Interaction Site

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Self-consistent description of a metal–water interface by the Kohn–Sham density functional theory and the three-dimensional reference interaction site model

The Journal of Chemical Physics ◽

10.1063/1.478883 ◽

1999 ◽

Vol 110 (20) ◽

pp. 10095-10112 ◽

Cited By ~ 437

Author(s):

Andriy Kovalenko ◽

Fumio Hirata

Keyword(s):

Density Functional Theory ◽

Density Functional ◽

Three Dimensional ◽

Water Interface ◽

Functional Theory ◽

Interaction Site ◽

Site Model ◽

Consistent Description ◽

Self Consistent ◽

Reference Interaction Site

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