The Oxidation Potential of Adenosine and Adenosine-Thymidine Base Pair in Chloroform Solution

2007 ◽  
Vol 129 (49) ◽  
pp. 15347-15353 ◽  
Author(s):  
Tonino Caruso ◽  
Amedeo Capobianco ◽  
Andrea Peluso
Keyword(s):  
Base Pair ◽  
Chloroform Solution ◽  
Oxidation Potential

scholarly journals Two-component assembly of recognition-encoded oligomers that form stable H-bonded duplexes

2020 ◽  
Vol 11 (2) ◽  
pp. 561-566 ◽  
Author(s):  
Luca Gabrielli ◽  
Diego Núñez-Villanueva ◽  
Christopher A. Hunter
Keyword(s):  
Phosphine Oxide ◽  
Base Pair ◽  
Chloroform Solution ◽  
Side Chains ◽  
Two Component ◽  
Component Assembly

Imine chemistry was used to assemble oligomers displaying phenol and phosphine oxide side chains that selectively base-pair to give duplexes, which are stable in chloroform solution.

scholarly journals Dependence of Fluorescence Quenching of CY3 Oligonucleotide Conjugates on the Oxidation Potential of the Stacking Base Pair

Molecules ◽  
2020 ◽  
Vol 25 (22) ◽  
pp. 5369
Author(s):  
Jens Sobek ◽  
Ralph Schlapbach
Keyword(s):  
Fluorescence Quenching ◽  
Single Molecule ◽  
Base Pair ◽  
Perfect Match ◽  
Oxidation Potential ◽  
Base Pairs ◽  
Oxidation Potentials ◽  
Fluorescence Measurements ◽  
Fluorescence Efficiency ◽  
Covalently Linked

To understand the complex fluorescence properties of astraphloxin (CY3)-labelled oligonucleotides, it is necessary to take into account the redox properties of the nucleobases. In oligonucleotide hybrids, we observed a dependence of the fluorescence intensity on the oxidation potential of the neighbouring base pair. For the series I < A < G < 8-oxoG, the extent of fluorescence quenching follows the trend of decreasing oxidation potentials. In a series of 7 nt hybrids, stacking interactions of CY3 with perfect match and mismatch base pairs were found to stabilise the hybrid by 7–8 kJ/mol. The fluorescence measurements can be explained by complex formation resulting in fluorescence quenching that prevails over the steric effect of a reduced excited state trans-cis isomerisation, which was expected to increase the fluorescence efficiency of the dye when stacking to a base pair. This can be explained by the fact that, in a double strand, base pairing and stacking cause a dramatic change in the oxidation potential of the nucleobases. In single-molecule fluorescence measurements, the oxidation of G to 8-oxoG was observed as a result of photoinduced electron transfer and subsequent chemical reactions. Our results demonstrate that covalently linked CY3 is a potent oxidant towards dsDNA. Sulfonated derivatives should be used instead.

The oxidation of Inconel alloy MA754 at low oxidation potential

1983 ◽  
Vol 41 ◽  
pp. 218-219
Author(s):  
D. N. Braski ◽  
P. D. Goodell ◽  
J. V. Cathcart ◽  
R. H. Kane
Keyword(s):  
Surface Layer ◽  
Oxidation Potential ◽  
Metal Interface ◽  
Elevated Temperature Strength ◽  
Surface Conditions ◽  
Inconel Alloy ◽  
Inco Alloy ◽  
Resistance To Oxidation ◽  
Oxide Particles ◽  
Cold Worked

It has been known for some time that the addition of small oxide particles to an 80 Ni—20 Cr alloy not only increases its elevated-temperature strength, but also markedly improves its resistance to oxidation. The mechanism by which the oxide dispersoid enhances the oxidation resistance is being studied collaboratively by ORNL and INCO Alloy Products Company.Initial experiments were performed using INCONEL alloy MA754, which is nominally: 78 Ni, 20 Cr, 0.05 C, 0.3 Al, 0.5 Ti, 1.0 Fe, and 0.6 Y2O3 (wt %).Small disks (3 mm diam × 0.38 mm thick) were cut from MA754 plate stock and prepared with two different surface conditions. The first was prepared by mechanically polishing one side of a disk through 0.5 μm diamond on a syntron polisher while the second used an additional sulfuric acid-methanol electropolishing treatment to remove the cold-worked surface layer. Disks having both surface treatments were oxidized in a radiantly heated furnace for 30 s at 1000°C. Three different environments were investigated: hydrogen with nominal dew points of 0°C, —25°C, and —55°C. The oxide particles and films were examined in TEM by using extraction replicas (carbon) and by backpolishing to the oxide/metal interface. The particles were analyzed by EDS and SAD.

Detection of the Glanzmann's Thrombasthenia Mutations in Arab and Iraqi-Jewish Patients by Polymerase Chain Reaction and Restriction Analysis of Blood or Urine Samples

1991 ◽  
Vol 66 (04) ◽  
pp. 500-504 ◽  
Author(s):  
H Peretz ◽  
U Seligsohn ◽  
E Zwang ◽  
B S Coller ◽  
P J Newman
Keyword(s):  
Polymerase Chain Reaction ◽  
Base Pair ◽  
Restriction Analysis ◽  
Urine Samples ◽  
Chain Reaction ◽  
Base Pairs ◽  
Glanzmann’S Thrombasthenia ◽  
Glanzmann's Thrombasthenia ◽  
Base Pair Deletion ◽  
Polymerase Chain

SummarySevere Glanzmann's thrombasthenia is relatively frequent in Iraqi-Jews and Arabs residing in Israel. We have recently described the mutations responsible for the disease in Iraqi-Jews – an 11 base pair deletion in exon 12 of the glycoprotein IIIa gene, and in Arabs – a 13 base pair deletion at the AG acceptor splice site of exon 4 on the glycoprotein IIb gene. In this communication we show that the Iraqi-Jewish mutation can be identified directly by polymerase chain reaction and gel electrophoresis. With specially designed oligonucleotide primers encompassing the mutation site, an 80 base pair segment amplified in healthy controls was clearly distinguished from the 69 base pair segment produced in patients. Patients from 11 unrelated Iraqi-Jewish families had the same mutation. The Arab mutation was identified by first amplifying a DNA segment consisting of 312 base pairs in controls and of 299 base pairs in patients, and then digestion by a restriction enzyme Stu-1, which recognizes a site that is absent in the mutant gene. In controls the 312 bp segment was digested into 235 and 77 bp fragments, while in patients there was no change in the size of the amplified 299 bp segment. The mutation was found in patients from 3 out of 5 unrelated Arab families. Both Iraqi-Jewish and Arab mutations were detectable in DNA extracted from blood and urine samples. The described simple methods of identifying the mutations should be useful for detection of the numerous potential carriers among the affected kindreds and for prenatal diagnosis using DNA extracted from chorionic villi samples.

Mutation Spectrum in Patients with Wiskott-Aldrich Syndrome and X-linked Thrombocytopenia: Identification of Twelve Different Mutations in the WASP Gene

1996 ◽  
Vol 75 (04) ◽  
pp. 546-550 ◽  
Author(s):  
Marianne Schwartz ◽  
Albert Békássy ◽  
Mikael Donnér ◽  
Thomas Hertel ◽  
Stefan Hreidarson ◽  
...  
Keyword(s):  
Base Pair ◽  
Hot Spot ◽  
Missense Mutations ◽  
Nucleotide Substitutions ◽  
Exon 2 ◽  
Wiskott Aldrich Syndrome ◽  
Base Pair Deletion ◽  
Reliable Diagnosis ◽  
Wasp Gene ◽  
Detection Of Mutations

SummaryTwelve different mutations in the WASP gene were found in twelve unrelated families with Wiskott-Aldrich syndrome (WAS) or X-linked thrombocytopenia (XLT). Four frameshift, one splice, one nonsense mutation, and one 18-base-pair deletion were detected in seven patients with WAS. Only missense mutations were found in five patients diagnosed as having XLT. One of the nucleotide substitutions in exon 2 (codon 86) results in an Arg to Cys replacement. Two other nucleotide substitutions in this codon, R86L and R86H, have been reported previously, both giving rise to typical WAS symptoms, indicating a mutational hot spot in this codon. The finding of mutations in the WASP gene in both WAS and XLT gives further evidence of these syndromes being allelic. The relatively small size of the WASP gene facilitates the detection of mutations and a reliable diagnosis of both carriers and affected fetuses in families with WAS or XLT.

Assessment of Self-Heating Susceptibility of Indian Coal Seams – A Neural Network Approach

2014 ◽  
Vol 59 (4) ◽  
pp. 1061-1076 ◽  
Author(s):  
D.C. Panigrahi ◽  
S.K. Ray
Keyword(s):  
Neural Network ◽  
Spontaneous Combustion ◽  
Potential Method ◽  
Oxidation Potential ◽  
Wet Oxidation ◽  
Experimental Conditions ◽  
Neural Network Approach ◽  
Indian Coal ◽  
Petrographic Analyses ◽  
Artificial Neural Network Ann

Abstract The paper addresses an electro-chemical method called wet oxidation potential technique for determining the susceptibility of coal to spontaneous combustion. Altogether 78 coal samples collected from thirteen different mining companies spreading over most of the Indian Coalfields have been used for this experimental investigation and 936 experiments have been carried out by varying different experimental conditions to standardize this method for wider application. Thus for a particular sample 12 experiments of wet oxidation potential method were carried out. The results of wet oxidation potential (WOP) method have been correlated with the intrinsic properties of coal by carrying out proximate, ultimate and petrographic analyses of the coal samples. Correlation studies have been carried out with Design Expert 7.0.0 software. Further, artificial neural network (ANN) analysis was performed to ensure best combination of experimental conditions to be used for obtaining optimum results in this method. All the above mentioned analysis clearly spelt out that the experimental conditions should be 0.2 N KMnO4 solution with 1 N KOH at 45°C to achieve optimum results for finding out the susceptibility of coal to spontaneous combustion. The results have been validated with Crossing Point Temperature (CPT) data which is widely used in Indian mining scenario.

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