United-Atom Discrete Molecular Dynamics of Proteins Using Physics-Based Potentials

2008 ◽  
Vol 4 (12) ◽  
pp. 2001-2010 ◽  
Author(s):  
Agustí Emperador ◽  
Tim Meyer ◽  
Modesto Orozco
Keyword(s):  
Molecular Dynamics ◽  
Discrete Molecular Dynamics

scholarly journals Native-like RNA Tertiary Structures Using a Sequence-Encoded Cleavage Agent and Refinement by Discrete Molecular Dynamics

2009 ◽  
Vol 131 (7) ◽  
pp. 2541-2546 ◽  
Author(s):  
Costin M. Gherghe ◽  
Christopher W. Leonard ◽  
Feng Ding ◽  
Nikolay V. Dokholyan ◽  
Kevin M. Weeks
Keyword(s):  
Molecular Dynamics ◽  
Tertiary Structures ◽  
Discrete Molecular Dynamics

scholarly journals Discrete Molecular Dynamics: An Efficient And Versatile Simulation Method For Fine Protein Characterization

2012 ◽  
Vol 116 (29) ◽  
pp. 8375-8382 ◽  
Author(s):  
David Shirvanyants ◽  
Feng Ding ◽  
Douglas Tsao ◽  
Srinivas Ramachandran ◽  
Nikolay V. Dokholyan
Keyword(s):  
Molecular Dynamics ◽  
Simulation Method ◽  
Protein Characterization ◽  
Discrete Molecular Dynamics

scholarly journals Ab Initio Folding of Proteins with All-Atom Discrete Molecular Dynamics

Structure ◽  
2008 ◽  
Vol 16 (7) ◽  
pp. 1010-1018 ◽  
Author(s):  
Feng Ding ◽  
Douglas Tsao ◽  
Huifen Nie ◽  
Nikolay V. Dokholyan
Keyword(s):  
Molecular Dynamics ◽  
Ab Initio ◽  
Discrete Molecular Dynamics

scholarly journals The maturation of HIV-1 protease precursor studied by discrete molecular dynamics

2013 ◽  
Vol 82 (4) ◽  
pp. 633-639 ◽  
Author(s):  
Sachie Kimura ◽  
Martina Caldarini ◽  
Ricardo A. Broglia ◽  
Nikolay V. Dokholyan ◽  
Guido Tiana
Keyword(s):  
Molecular Dynamics ◽  
Discrete Molecular Dynamics ◽  
Protease Precursor ◽  
Hiv 1
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