Designing Peptide Sequences in Flexible Chain Conformations to Bind RNA: A Search Algorithm Combining Monte Carlo, Self-Consistent Mean Field and Concerted Rotation Techniques

2015 ◽  
Vol 11 (2) ◽  
pp. 740-752 ◽  
Author(s):  
Xingqing Xiao ◽  
Paul F. Agris ◽  
Carol K. Hall
Keyword(s):  
Monte Carlo ◽  
Search Algorithm ◽  
Mean Field ◽  
Flexible Chain ◽  
Self Consistent ◽  
Chain Conformations ◽  
Concerted Rotation

Computer modeling of polymer stars in variable solvent conditions: a comparison of MD simulations, self-consistent field (SCF) modeling and novel hybrid Monte Carlo SCF approach

Soft Matter ◽  
2021 ◽  
Author(s):  
Alexander D. Kazakov ◽  
Varvara M. Prokacheva ◽  
Filip Uhlík ◽  
Peter Košovan ◽  
Frans A. M. Leermakers
Keyword(s):  
Monte Carlo ◽  
Hybrid Method ◽  
Mean Field ◽  
Md Simulations ◽  
Coarse Grained ◽  
Hybrid Monte Carlo ◽  
Mean Field Models ◽  
Consistent Field ◽  
Self Consistent ◽  
Self Consistent Field

We present a hybrid method based on a combination of coarse-grained and mean-field models for simulation of polymer solutions.

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