scholarly journals High-Resolution Free-Energy Landscape Analysis of α-Helical Protein Folding: HP35 and Its Double Mutant

2013 ◽  
Vol 9 (12) ◽  
pp. 5257-5266 ◽  
Author(s):  
Polina V. Banushkina ◽  
Sergei V. Krivov
Keyword(s):  
Free Energy ◽  
Protein Folding ◽  
High Resolution ◽  
Double Mutant ◽  
Energy Landscape ◽  
Landscape Analysis ◽  
Free Energy Landscape ◽  
Helical Protein

scholarly journals High-Resolution Mapping of a Repeat Protein Folding Free Energy Landscape

2016 ◽  
Vol 111 (11) ◽  
pp. 2368-2376 ◽  
Author(s):  
Martin J. Fossat ◽  
Thuy P. Dao ◽  
Kelly Jenkins ◽  
Mariano Dellarole ◽  
Yinshan Yang ◽  
...  
Keyword(s):  
Free Energy ◽  
Protein Folding ◽  
High Resolution ◽  
Energy Landscape ◽  
Free Energy Landscape ◽  
Repeat Protein ◽  
High Resolution Mapping ◽  
Resolution Mapping ◽  
Folding Free Energy

High-resolution free energy landscape analysis of protein folding

2015 ◽  
Vol 43 (2) ◽  
pp. 157-161 ◽  
Author(s):  
Polina V. Banushkina ◽  
Sergei V. Krivov
Keyword(s):  
Free Energy ◽  
Protein Folding ◽  
High Resolution ◽  
Energy Landscape ◽  
Quantitative Description ◽  
Free Energy Landscape ◽  
Transition Path ◽  
Exponential Factor ◽  
Basic Properties ◽  
Folding Dynamics

The free energy landscape can provide a quantitative description of folding dynamics, if determined as a function of an optimally chosen reaction coordinate. The profile together with the optimal coordinate allows one to directly determine such basic properties of folding dynamics as the configurations of the minima and transition states, the heights of the barriers, the value of the pre-exponential factor and its relation to the transition path times. In the present study, we review the framework, in particular, the approach to determine such an optimal coordinate, and its application to the analysis of simulated protein folding dynamics.

High-Resolution Imaging of Maltoporin LamB while Quantifying the Free-Energy Landscape and Asymmetry of Sugar Binding

Nano Letters ◽  
2019 ◽  
Vol 19 (9) ◽  
pp. 6442-6453 ◽  
Author(s):  
Estefania Mulvihill ◽  
Moritz Pfreundschuh ◽  
Johannes Thoma ◽  
Noah Ritzmann ◽  
Daniel J. Müller
Keyword(s):  
Free Energy ◽  
High Resolution ◽  
Energy Landscape ◽  
Free Energy Landscape ◽  
High Resolution Imaging ◽  
Sugar Binding ◽  
Resolution Imaging

Chemical Denaturants Smoothen Ruggedness on the Free Energy Landscape of Protein Folding

Biochemistry ◽  
2017 ◽  
Vol 56 (31) ◽  
pp. 4053-4063 ◽  
Author(s):  
Pooja Malhotra ◽  
Prashant N. Jethva ◽  
Jayant B. Udgaonkar
Keyword(s):  
Free Energy ◽  
Protein Folding ◽  
Energy Landscape ◽  
Free Energy Landscape
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