A Hybrid All-Atom Structure-Based Model for Protein Folding and Large Scale Conformational Transitions

2011 ◽  
Vol 7 (12) ◽  
pp. 4208-4217 ◽  
Author(s):  
Ludovico Sutto ◽  
Ilaria Mereu ◽  
Francesco Luigi Gervasio
Keyword(s):  
Protein Folding ◽  
Large Scale ◽  
Conformational Transitions

Assessing the performance of the MM/PBSA and MM/GBSA methods. 10. Impacts of enhanced sampling and variable dielectric model on protein–protein Interactions

2019 ◽  
Vol 21 (35) ◽  
pp. 18958-18969 ◽  
Author(s):  
Ercheng Wang ◽  
Gaoqi Weng ◽  
Huiyong Sun ◽  
Hongyan Du ◽  
Feng Zhu ◽  
...  
Keyword(s):  
Protein Folding ◽  
Protein Interactions ◽  
Conformational Transitions ◽  
Protein Recognition ◽  
Enhanced Sampling ◽  
Protein Protein Interactions ◽  
Dielectric Model

Enhanced sampling has been extensively used to capture the conformational transitions in protein folding, but it attracts much less attention in the studies of protein–protein recognition.

scholarly journals Discovery of Manassantin A Protein Targets Using Large-Scale Protein Folding and Stability Measurements

2016 ◽  
Vol 15 (8) ◽  
pp. 2688-2696 ◽  
Author(s):  
M. Ariel Geer Wallace ◽  
Do-Yeon Kwon ◽  
Douglas H. Weitzel ◽  
Chen-Ting Lee ◽  
Tesia N. Stephenson ◽  
...  
Keyword(s):  
Protein Folding ◽  
Large Scale ◽  
Protein Targets ◽  
Stability Measurements
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