PELE:  Protein Energy Landscape Exploration. A Novel Monte Carlo Based Technique

2005 ◽  
Vol 1 (6) ◽  
pp. 1304-1311 ◽  
Author(s):  
Kenneth W. Borrelli ◽  
Andreas Vitalis ◽  
Raul Alcantara ◽  
Victor Guallar
Keyword(s):  
Monte Carlo ◽  
Energy Landscape ◽  
Protein Energy ◽  
Protein Energy Landscape

scholarly journals Mechanistic Basis for Ubiquitin Modulation of a Protein Energy Landscape

2021 ◽  
Vol 120 (3) ◽  
pp. 126a
Author(s):  
Emma Carroll ◽  
Naomi R. Latorraca ◽  
Johanna Lindner ◽  
Jeff Pelton ◽  
Brendan Maguire ◽  
...  
Keyword(s):  
Energy Landscape ◽  
Protein Energy ◽  
Mechanistic Basis ◽  
Protein Energy Landscape

scholarly journals The roughness of the protein energy landscape results in anomalous diffusion of the polypeptide backbone

2015 ◽  
Vol 17 (2) ◽  
pp. 762-782 ◽  
Author(s):  
Martin Volk ◽  
Lilia Milanesi ◽  
Jonathan P. Waltho ◽  
Christopher A. Hunter ◽  
Godfrey S. Beddard
Keyword(s):  
Anomalous Diffusion ◽  
Disulfide Bonds ◽  
Energy Landscape ◽  
Protein Energy ◽  
Polypeptide Backbone ◽  
Protein Disulfide Bonds ◽  
Protein Disulfide ◽  
Protein Energy Landscape

Recombination of photolysed protein disulfide bonds confirms subdiffusional backbone motion and measures the roughness of the protein's energy landscape.

scholarly journals Relaxation of backbone bond geometry improves protein energy landscape modeling

2013 ◽  
Vol 23 (1) ◽  
pp. 47-55 ◽  
Author(s):  
Patrick Conway ◽  
Michael D. Tyka ◽  
Frank DiMaio ◽  
David E. Konerding ◽  
David Baker
Keyword(s):  
Energy Landscape ◽  
Landscape Modeling ◽  
Protein Energy ◽  
Protein Energy Landscape

scholarly journals Evidence of Simultaneous Spectral Hole Burning Involving Two Tiers of the Protein Energy Landscape in Cytochrome b6f

2019 ◽  
Vol 123 (51) ◽  
pp. 10930-10938
Author(s):  
Golia Shafiei ◽  
Alexander Levenberg ◽  
Maria A. Lujan ◽  
Rafael Picorel ◽  
Valter Zazubovich
Keyword(s):  
Energy Landscape ◽  
Hole Burning ◽  
Spectral Hole Burning ◽  
Cytochrome B6f ◽  
Spectral Hole ◽  
Protein Energy ◽  
Protein Energy Landscape
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