Transition-state modeling with empirical force fields

1993 ◽  
Vol 93 (7) ◽  
pp. 2439-2461 ◽  
Author(s):  
John E. Eksterowicz ◽  
K. N. Houk
Keyword(s):  
Transition State ◽  
Force Fields

scholarly journals Application of Q2MM to predictions in stereoselective synthesis

2018 ◽  
Vol 54 (60) ◽  
pp. 8294-8311 ◽  
Author(s):  
Anthony R. Rosales ◽  
Taylor R. Quinn ◽  
Jessica Wahlers ◽  
Anna Tomberg ◽  
Xin Zhang ◽  
...  
Keyword(s):  
Transition State ◽  
Molecular Mechanics ◽  
Stereoselective Synthesis ◽  
Force Fields ◽  
Accurate Prediction ◽  
State Force

Transition state force fields derived by Quantum Guided Molecular Mechanics (Q2MM) allows the rapid and accurate prediction of stereoselectivity.

Model Calculations of Isotope Effects. III. Isotope Effects in Hydrogen Transfer Reactions, and Transition State Force Fields

1979 ◽  
Vol 32 (9) ◽  
pp. 1869
Author(s):  
DJ McLennan
Keyword(s):  
Transition State ◽  
Hydrogen Transfer ◽  
Force Fields ◽  
Isotope Effects ◽  
Semiempirical Method ◽  
Model Calculations ◽  
Surface Hydrogen ◽  
Kinetic Isotope ◽  
State Force ◽  
Better Than

Model calculations of kinetic isotope effects for the reactions: C2H6+·CH3 → ·C2H5+CH4 CH4 + ·CF3 → ·CH3+CHF3 are reported. Transition state geometries were those calculated by Dewar and coworkers using the MNDO semiempirical method. Transition state force fields were formulated from empirical expressions for stretching, bending, linear bending and interaction valence force constants by using bond orders as disposable parameters. Although it proved impossible to assign a best force field to either reaction, the calculated isotope effects generally were in satisfactory agreement with experiment, and were better than those calculated from the MNDO potential energy surface. Hydrogen tunnelling is apparently implicated in the CH4+ CF3 reaction.

Use of the Magnetostatic Analogue In Electromagnetic Lens Engineering

1970 ◽  
Vol 28 ◽  
pp. 360-361
Author(s):  
John W. Coleman
Keyword(s):  
Boundary Conditions ◽  
High Performance ◽  
Force Fields ◽  
Optical Design ◽  
Direct Conversion ◽  
Design Engineering ◽  
Design Data ◽  
Scalar Potentials ◽  
Geometric Elements ◽  
At Will

In the design engineering of high performance electromagnetic lenses, the direct conversion of electron optical design data into drawings for reliable hardware is oftentimes difficult, especially in terms of how to mount parts to each other, how to tolerance dimensions, and how to specify finishes. An answer to this is in the use of magnetostatic analytics, corresponding to boundary conditions for the optical design. With such models, the magnetostatic force on a test pole along the axis may be examined, and in this way one may obtain priority listings for holding dimensions, relieving stresses, etc..The development of magnetostatic models most easily proceeds from the derivation of scalar potentials of separate geometric elements. These potentials can then be conbined at will because of the superposition characteristic of conservative force fields.

Memapsin 2, a drug target for Alzheimer's disease

2003 ◽  
Vol 70 ◽  
pp. 213-220 ◽  
Author(s):  
Gerald Koelsch ◽  
Robert T. Turner ◽  
Lin Hong ◽  
Arun K. Ghosh ◽  
Jordan Tang
Keyword(s):  
Crystal Structure ◽  
Alzheimer’S Disease ◽  
Alzheimer's Disease ◽  
Transition State ◽  
Amyloid Precursor Protein ◽  
Therapeutic Target ◽  
Drug Target ◽  
Aspartic Protease ◽  
Precursor Protein ◽  
Memapsin 2

Mempasin 2, a ϐ-secretase, is the membrane-anchored aspartic protease that initiates the cleavage of amyloid precursor protein leading to the production of ϐ-amyloid and the onset of Alzheimer's disease. Thus memapsin 2 is a major therapeutic target for the development of inhibitor drugs for the disease. Many biochemical tools, such as the specificity and crystal structure, have been established and have led to the design of potent and relatively small transition-state inhibitors. Although developing a clinically viable mempasin 2 inhibitor remains challenging, progress to date renders hope that memapsin 2 inhibitors may ultimately be useful for therapeutic reduction of ϐ-amyloid.

Collisional dynamics of Ca1D + HBr reactions: evidence for transition-state motions

1999 ◽  
Vol 97 (8) ◽  
pp. 967-976 ◽  
Author(s):  
M. Garay Salazar, J. M. Orea Rocha, A.
Keyword(s):  
Transition State ◽  
Collisional Dynamics
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