scholarly journals Optochemical Dissection of T-box Gene-Dependent Medial Floor Plate Development

2015 ◽  
Vol 10 (6) ◽  
pp. 1466-1475 ◽  
Author(s):  
Alexander Y. Payumo ◽  
Whitney J. Walker ◽  
Lindsey E. McQuade ◽  
Sayumi Yamazoe ◽  
James K. Chen
Keyword(s):  
Floor Plate ◽  
T Box

The zebrafish T-box genesno tailandspadetailare required for development of trunk and tail mesoderm and medial floor plate

Development ◽  
2002 ◽  
Vol 129 (14) ◽  
pp. 3311-3323 ◽  
Author(s):  
Sharon L. Amacher ◽  
Bruce W. Draper ◽  
Brian R. Summers ◽  
Charles B. Kimmel
Keyword(s):  
Embryonic Development ◽  
Neural Tube ◽  
Transcriptional Regulators ◽  
Floor Plate ◽  
Wild Type ◽  
T Box ◽  
No Tail ◽  
Ventral Neural Tube ◽  
Plate Formation ◽  
In Cells

T-box genes encode transcriptional regulators that control many aspects of embryonic development. Here, we demonstrate that the mesodermally expressed zebrafish spadetail (spt)/VegT and no tail (ntl)/Brachyury T-box genes are semi-redundantly and cell-autonomously required for formation of all trunk and tail mesoderm. Despite the lack of posterior mesoderm in spt–;ntl– embryos, dorsal-ventral neural tube patterning is relatively normal, with the notable exception that posterior medial floor plate is completely absent. This contrasts sharply with observations in single mutants, as mutations singly in ntl or spt enhance posterior medial floor plate development. We find that ntl function is required to repress medial floor plate and promote notochord fate in cells of the wild-type notochord domain and that spt and ntl together are required non cell-autonomously for medial floor plate formation, suggesting that an inducing signal present in wild-type mesoderm is lacking in spt–;ntl– embryos.

Intronic enhancers control expression of zebrafish sonic hedgehog in floor plate and notochord

Development ◽  
1999 ◽  
Vol 126 (10) ◽  
pp. 2103-2116 ◽  
Author(s):  
F. Muller ◽  
B. Chang ◽  
S. Albert ◽  
N. Fischer ◽  
L. Tora ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Sonic Hedgehog ◽  
Screening Strategy ◽  
Floor Plate ◽  
T Box ◽  
Important Region ◽  
Signalling Molecule ◽  
Intron 1 ◽  
Wide Range ◽  
Enhancer Sequences

The signalling molecule Sonic hedgehog (Shh) controls a wide range of differentiation processes during vertebrate development. Numerous studies have suggested that the absolute levels as well as correct spatial and temporal expression of shh are critical for its function. To investigate the regulation of shh expression, we have studied the mechanism controlling its spatial expression in the zebrafish. We employed an enhancer screening strategy in zebrafish embryos based on co-injection of putative enhancer sequences with a reporter construct and analysis of mosaic expression in accumulated expression maps. Enhancers were identified in intron 1 and 2 that mediate floor plate and notochord expression. These enhancers also drive notochord and floor plate expression in the mouse embryo strongly suggesting that the mechanisms controlling shh expression in the midline are conserved between zebrafish and mouse. Functional analysis in the zebrafish embryo revealed that the intronic enhancers have a complex organisation. Two activator regions, ar-A and ar-C, were identified in intron 1 and 2, respectively, which mediate mostly notochord and floor plate expression. In contrast, another activating region, ar-B, in intron 1 drives expression in the floor plate. Deletion fine mapping of ar-C delineated three regions of 40 bp to be essential for activity. These regions do not contain binding sites for HNF3beta, the winged helix transcription factor previously implicated in the regulation of shh expression, indicating the presence of novel regulatory mechanisms. A T-box transcription factor-binding site was found in a functionally important region that forms specific complexes with protein extracts from wild-type but not from notochord-deficient mutant embryos.

Defining subregions of Hensen's node essential for caudalward movement, midline development and cell survival

Development ◽  
1999 ◽  
Vol 126 (21) ◽  
pp. 4771-4783 ◽  
Author(s):  
J.B. Charrier ◽  
M.A. Teillet ◽  
F. Lapointe ◽  
N.M. Le Douarin
Keyword(s):  
Primitive Streak ◽  
Floor Plate ◽  
Paraxial Mesoderm ◽  
Avian Embryo ◽  
Tail Bud ◽  
Anterior Portion ◽  
T Box ◽  
Endodermal Cells ◽  
Further Development ◽  
Midline Development

Hensen's node, also called the chordoneural hinge in the tail bud, is a group of cells that constitutes the organizer of the avian embryo and that expresses the gene HNF-3(β). During gastrulation and neurulation, it undergoes a rostral-to-caudal movement as the embryo elongates. Labeling of Hensen's node by the quail-chick chimera system has shown that, while moving caudally, Hensen's node leaves in its wake not only the notochord but also the floor plate and a longitudinal strand of dorsal endodermal cells. In this work, we demonstrate that the node can be divided into functionally distinct subregions. Caudalward migration of the node depends on the presence of the most posterior region, which is closely apposed to the anterior portion of the primitive streak as defined by expression of the T-box gene Ch-Tbx6L. We call this region the axial-paraxial hinge because it corresponds to the junction of the presumptive midline axial structures (notochord and floor plate) and the paraxial mesoderm. We propose that the axial-paraxial hinge is the equivalent of the neuroenteric canal of other vertebrates such as Xenopus. Blocking the caudal movement of Hensen's node at the 5- to 6-somite stage by removing the axial-paraxial hinge deprives the embryo of midline structures caudal to the brachial level, but does not prevent formation of the neural tube and mesoderm located posteriorly. However, the whole embryonic region generated posterior to the level of Hensen's node arrest undergoes widespread apoptosis within the next 24 hours. Hensen's node-derived structures (notochord and floor plate) thus appear to produce maintenance factor(s) that ensures the survival and further development of adjacent tissues.

Table Substitution Box Method for Increasing Security in Interval Splitting Arithmetic Coding

2017 ◽  
Vol 13 (10) ◽  
pp. 6552-6557
Author(s):  
E.Wiselin Kiruba ◽  
Ramar K.
Keyword(s):  
Compression Ratio ◽  
Arithmetic Coding ◽  
Substitution Box ◽  
Plain Text ◽  
T Box ◽  
Novel Approach ◽  
Permutation Methods ◽  
Message Digest ◽  
Box Method ◽  
Arithmetic Coder

Amalgamation of compression and security is indispensable in the field of multimedia applications. A novel approach to enhance security with compression is discussed in this  research paper. In secure arithmetic coder (SAC), security is provided by input and output permutation methods and compression is done by interval splitting arithmetic coding. Permutation in SAC is susceptible to attacks. Encryption issues associated with SAC is dealt in this research method. The aim of this proposed method is to encrypt the data first by Table Substitution Box (T-box) and then to compress by Interval Splitting Arithmetic Coder (ISAC). This method incorporates dynamic T-box in order to provide better security. T-box is a method, constituting elements based on the random output of Pseudo Random Generator (PRNG), which gets the input from Secure Hash Algorithm-256 (SHA-256) message digest. The current scheme is created, based on the key, which is known to the encoder and decoder. Further, T-boxes are created by using the previous message digest as a key.  Existing interval splitting arithmetic coding of SAC is applied for compression of text data. Interval splitting finds a relative position to split the intervals and this in turn brings out compression. The result divulges that permutation replaced by T-box method provides enhanced security than SAC. Data is not revealed when permutation is replaced by T-box method. Security exploration reveals that the data remains secure to cipher text attacks, known plain text attacks and chosen plain text attacks. This approach results in increased security to Interval ISAC. Additionally the compression ratio  is compared by transferring the outcome of T-box  to traditional  arithmetic coding. The comparison proved that there is a minor reduction in compression ratio in ISAC than arithmetic coding. However the security provided by ISAC overcomes the issues of compression ratio in  arithmetic coding. 

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