A Map of Minor Groove Shape and Electrostatic Potential from Hydroxyl Radical Cleavage Patterns of DNA

Eric P. Bishop; Remo Rohs; Stephen C. J. Parker; Sean M. West; Peng Liu; Richard S. Mann; Barry Honig; Thomas D. Tullius

doi:10.1021/cb200155t

A Map of Minor Groove Shape and Electrostatic Potential from Hydroxyl Radical Cleavage Patterns of DNA

ACS Chemical Biology ◽

10.1021/cb200155t ◽

2011 ◽

Vol 6 (12) ◽

pp. 1314-1320 ◽

Cited By ~ 65

Author(s):

Eric P. Bishop ◽

Remo Rohs ◽

Stephen C. J. Parker ◽

Sean M. West ◽

Peng Liu ◽

...

Keyword(s):

Hydroxyl Radical ◽

Electrostatic Potential ◽

Minor Groove ◽

Groove Shape ◽

Hydroxyl Radical Cleavage ◽

Radical Cleavage

Download Full-text

Complexes of mismatched and complementary DNA with minor groove binders. Structures at nucleotide resolution via an improved hydroxyl radical cleavage methodology

Mutation Research/Genetic Toxicology and Environmental Mutagenesis ◽

10.1016/j.mrgentox.2011.08.004 ◽

2011 ◽

Vol 726 (1) ◽

pp. 47-53 ◽

Cited By ~ 1

Author(s):

Dobroslawa Bialonska ◽

Kenneth Song ◽

Philip H. Bolton

Keyword(s):

Hydroxyl Radical ◽

Minor Groove ◽

Complementary Dna ◽

Minor Groove Binders ◽

Hydroxyl Radical Cleavage ◽

Radical Cleavage ◽

Nucleotide Resolution ◽

Groove Binders

Download Full-text

Miniaturized Sequencing Gel System for Quick Analysis of DNA by Hydroxyl Radical Cleavage

Applied Biochemistry and Biotechnology ◽

10.1007/s12010-013-0512-8 ◽

2013 ◽

Vol 172 (1) ◽

pp. 1-8 ◽

Cited By ~ 2

Author(s):

Taichi E. Takasuka ◽

Yi-Ju Hsieh ◽

Arnold Stein

Keyword(s):

Hydroxyl Radical ◽

Hydroxyl Radical Cleavage ◽

Radical Cleavage ◽

Gel System

Download Full-text

Hydroxyl radical cleavage of tRNA in the ribosomal P site.

Proceedings of the National Academy of Sciences ◽

10.1073/pnas.89.17.7851 ◽

1992 ◽

Vol 89 (17) ◽

pp. 7851-7855 ◽

Cited By ~ 35

Author(s):

A. Huttenhofer ◽

H. F. Noller

Keyword(s):

Hydroxyl Radical ◽

Hydroxyl Radical Cleavage ◽

Radical Cleavage ◽

Ribosomal P

Download Full-text

Finding and Characterizing the Complexes of Drug Like Molecules with Quadruplex DNA: Combined Use of an Enhanced Hydroxyl Radical Cleavage Protocol and NMR

PLoS ONE ◽

10.1371/journal.pone.0096218 ◽

2014 ◽

Vol 9 (4) ◽

pp. e96218 ◽

Cited By ~ 2

Author(s):

Harikrushan Ranpura ◽

Dobroslawa Bialonska ◽

Philip H. Bolton

Keyword(s):

Hydroxyl Radical ◽

Quadruplex Dna ◽

Combined Use ◽

Hydroxyl Radical Cleavage ◽

Radical Cleavage

Download Full-text

Identification of Divalent Metal Ion Binding Sites in RNA/DNA-Metabolizing Enzymes by Fe(II)-Mediated Hydroxyl Radical Cleavage

Handbook of RNA Biochemistry ◽

10.1002/9783527647064.ch19 ◽

2014 ◽

pp. 397-406

Author(s):

Yan-Guo Ren ◽

Niklas Henriksson ◽

Anders Virtanen

Keyword(s):

Hydroxyl Radical ◽

Metal Ion ◽

Divalent Metal ◽

Metal Ion Binding ◽

Metabolizing Enzymes ◽

Divalent Metal Ion ◽

Hydroxyl Radical Cleavage ◽

Radical Cleavage ◽

Ion Binding Sites ◽

Metal Ion Binding Sites

Download Full-text

Structure of Homeodomain-Leucine Zipper/DNA Complexes Studied Using Hydroxyl Radical Cleavage of DNA and Methylation Interference†

Biochemistry ◽

10.1021/bi0513150 ◽

2005 ◽

Vol 44 (51) ◽

pp. 16796-16803 ◽

Cited By ~ 13

Author(s):

Adriana E. Tron ◽

Raúl N. Comelli ◽

Daniel H. Gonzalez

Keyword(s):

Hydroxyl Radical ◽

Leucine Zipper ◽

Dna Complexes ◽

Hydroxyl Radical Cleavage ◽

Radical Cleavage

Download Full-text

Mapping nucleic acid structure by hydroxyl radical cleavage

Current Opinion in Chemical Biology ◽

10.1016/j.cbpa.2005.02.009 ◽

2005 ◽

Vol 9 (2) ◽

pp. 127-134 ◽

Cited By ~ 129

Author(s):

Thomas D Tullius ◽

Jason A Greenbaum

Keyword(s):

Nucleic Acid ◽

Hydroxyl Radical ◽

Nucleic Acid Structure ◽

Hydroxyl Radical Cleavage ◽

Radical Cleavage ◽

Acid Structure

Download Full-text

Identification of Divalent Metal Ion Binding Sites in RNA/DNA-metabolizing Enzymes by Fe(II)-mediated Hydroxyl Radical Cleavage

Handbook of RNA Biochemistry ◽

10.1002/9783527619504.ch20 ◽

2008 ◽

pp. 345-353

Author(s):

Yan-Guo Ren ◽

Niklas Henriksson ◽

Anders Virtanen

Keyword(s):

Hydroxyl Radical ◽

Metal Ion ◽

Divalent Metal ◽

Metal Ion Binding ◽

Metabolizing Enzymes ◽

Divalent Metal Ion ◽

Hydroxyl Radical Cleavage ◽

Radical Cleavage ◽

Ion Binding Sites ◽

Metal Ion Binding Sites

Download Full-text

Investigation of the Drug Like Molecule Binding to DNA Single Strand Breaks using Improved Hydroxyl Radical Cleavage Methodology

Biophysical Journal ◽

10.1016/j.bpj.2013.11.3821 ◽

2014 ◽

Vol 106 (2) ◽

pp. 691a

Author(s):

Shu Zhang ◽

Philip H. Bolton

Keyword(s):

Hydroxyl Radical ◽

Single Strand ◽

Strand Breaks ◽

Single Strand Breaks ◽

Hydroxyl Radical Cleavage ◽

Radical Cleavage

Download Full-text

Constructing Accurate Contact Maps for Hydroxyl-Radical-Cleavage-Based High-Throughput RNA Structure Inference

IEEE Transactions on Biomedical Engineering ◽

10.1109/tbme.2011.2109716 ◽

2011 ◽

Vol 58 (5) ◽

pp. 1347-1355 ◽

Cited By ~ 3

Author(s):

Jinkyu Kim ◽

Hanjoo Kim ◽

Hyeyoung Min ◽

Sungroh Yoon

Keyword(s):

Hydroxyl Radical ◽

High Throughput ◽

Rna Structure ◽

Contact Maps ◽

Hydroxyl Radical Cleavage ◽

Radical Cleavage

Download Full-text