RNA Folding Dynamics: Computer Simulations by a Genetic Algorithm

1997 ◽  
pp. 229-245 ◽  
Author(s):  
A. P. Gultyaev ◽  
F. H. D. van Batenburg ◽  
C. W. A. Pleij
Keyword(s):  
Genetic Algorithm ◽  
Computer Simulations ◽  
Rna Folding ◽  
Folding Dynamics

Efficient computation of RNA folding dynamics

2004 ◽  
Vol 37 (17) ◽  
pp. 4731-4741 ◽  
Author(s):  
Michael T Wolfinger ◽  
W Andreas Svrcek-Seiler ◽  
Christoph Flamm ◽  
Ivo L Hofacker ◽  
Peter F Stadler
Keyword(s):  
Rna Folding ◽  
Efficient Computation ◽  
Folding Dynamics

scholarly journals Pattern and Feature Selection by Genetic Algorithms in Nearest Neighbor Classification

2000 ◽  
Vol 4 (2) ◽  
pp. 138-145 ◽  
Author(s):  
Hisao Ishibuchi ◽  
◽  
Tomoharu Nakashima
Keyword(s):  
Genetic Algorithm ◽  
Genetic Algorithms ◽  
Feature Selection ◽  
Computer Simulations ◽  
Nearest Neighbor ◽  
Classification Performance ◽  
Data Sets ◽  
Nearest Neighbor Classification ◽  
Reference Set ◽  
Neighbor Classification

This paper proposes a genetic-algorithm-based approach for finding a compact reference set in nearest neighbor classification. The reference set is designed by selecting a small number of reference patterns from a large number of training patterns using a genetic algorithm. The genetic algorithm also removes unnecessary features. The reference set in our nearest neighbor classification consists of selected patterns with selected features. A binary string is used for representing the inclusion (or exclusion) of each pattern and feature in the reference set. Our goal is to minimize the number of selected patterns, to minimize the number of selected features, and to maximize the classification performance of the reference set. Computer simulations on commonly used data sets examine the effectiveness of our approach.

Adiabatic ansatz in RNA folding dynamics

1997 ◽  
Vol 56 (1) ◽  
pp. 927-930 ◽  
Author(s):  
Ariel Fernández ◽  
Gustavo A. Appignanesi ◽  
Ruben A. Montani
Keyword(s):  
Rna Folding ◽  
Folding Dynamics

Bridging the Gap Between Optical Spectroscopic Experiments and Computer Simulations for Fast Protein Folding Dynamics

2012 ◽  
Vol 2 (1) ◽  
pp. 45-58 ◽  
Author(s):  
Raymond Z. Cui ◽  
Daniel-Adriano Silva ◽  
Jian Song ◽  
Gregory R. Bowman ◽  
Wei Zhuang ◽  
...  
Keyword(s):  
Protein Folding ◽  
Computer Simulations ◽  
Folding Dynamics

scholarly journals Reflections on 20 years of RNA folding, dynamics, and structure

RNA ◽  
2015 ◽  
Vol 21 (4) ◽  
pp. 723-724
Author(s):  
Rick Russell
Keyword(s):  
Rna Folding ◽  
Folding Dynamics

Bridging the Gap Between Optical Spectroscopic Experiments and Computer Simulations for Fast Protein Folding Dynamics

2012 ◽  
Vol 2 (1) ◽  
pp. 45-58 ◽  
Author(s):  
Raymond Z. Cui ◽  
Daniel-Adriano Silva ◽  
Jian Song ◽  
Gregory R. Bowman ◽  
Wei Zhuang ◽  
...  
Keyword(s):  
Protein Folding ◽  
Computer Simulations ◽  
Folding Dynamics

Energy-level statistics in the fine conformational resolution of RNA folding dynamics

1999 ◽  
Vol 60 (5) ◽  
pp. 5888-5893
Author(s):  
Ariel Fernández ◽  
Teresita Burastero ◽  
Rodolfo Salthú ◽  
Ana Tablar
Keyword(s):  
Energy Level ◽  
Rna Folding ◽  
Level Statistics ◽  
Folding Dynamics
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