Thermodynamic Studies of the Core Histones:  pH and Ionic Strength Effects on the Stability of the (H3−H4)/(H3−H4)2System†

Biochemistry ◽  
1996 ◽  
Vol 35 (6) ◽  
pp. 2037-2046 ◽  
Author(s):  
Vassiliki Karantza ◽  
Ernesto Freire ◽  
Evangelos N. Moudrianakis
Biochemistry ◽  
1995 ◽  
Vol 34 (17) ◽  
pp. 5988-5996 ◽  
Author(s):  
Vassiliki Karantza ◽  
Andreas D. Baxevanis ◽  
Ernesto Freire ◽  
Evangelos N. Moudrianakis

2020 ◽  
Author(s):  
Tian-Xia Jiang ◽  
Shuang Ma ◽  
Xia Han ◽  
Zi-Yu Luo ◽  
Qian-Qian Zhu ◽  
...  

AbstractThe epigenetic inheritance relies on stability of histone marks, but various diseases, including aging-related diseases, are usually associated with alterations of histone marks. How the stability of histone marks is maintained still remains unclear. The core histones can be degraded by the atypical proteasome, which contains the proteasome activator PA200, in an acetylation-dependent manner during somatic DNA damage response and spermiogenesis. Here we show that PA200 promotes the transcription-coupled degradation of the core histones, and plays an important role in maintaining the stability of histone marks. Degradation of the histone variant H3.3, which is incorporated into chromatin during transcription, was much faster than that of its canonical form H3.1, which is incorporated during DNA replication. This degradation of the core histones could be suppressed by the transcription inhibitor, the proteasome inhibitor or deletion of PA200. The histone deacetylase inhibitor accelerated the degradation rates of H3 in general, especially its variant H3.3, while the mutations of the putative acetyl-lysine-binding region of PA200 abolished histone degradation in the G1-arrested cells, supporting that acetylation is involved in the degradation of the core histones. Deletion of PA200 dramatically altered deposition of the active transcriptional hallmarks (H3K4me3 and H3K56ac) and transcription, especially during cellular aging. Furthermore, deletion of PA200 or its yeast ortholog Blm10 accelerated cellular aging. Notably, the PA200-deficient mice displayed a range of aging-related deteriorations, including immune malfunction, anxiety-like behaviors and shorter lifespan. Thus, the proteasome activator PA200 is critical to the maintenance of the stability of histone marks during transcription and aging.


2021 ◽  
Vol 22 ◽  
Author(s):  
Yu-Shan Chen ◽  
Xia Han ◽  
Kui Lin ◽  
Tian-Xia Jiang ◽  
Xiao-Bo Qiu

Background: Histones are basic elements of the chromatin, and are critical to controlling chromatin structure and transcription. The proteasome activator PA200 promotes the acetylation-dependent proteasomal degradation of the core histones during spermatogenesis, DNA repair, transcription and cellular aging, and maintains the stability of histone marks. Objective: The study aimed to explore whether the yeast ortholog of PA200, Blm10, promotes degradation of the core histones during transcription and regulates transcription especially during aging. Method: Protein degradation assays were performed to detect the role of Blm10 in histone degradation during transcription. mRNA profiles were compared in WT and mutant BY4741 or MDY510 yeast cells by RNA-sequencing. Results: The core histones can be degraded by the Blm10-proteasome in the non-replicating yeast, suggesting that Blm10 promotes the transcription-coupled degradation of the core histones. Blm10 preferentially regulates transcription in aged yeast, especially transcription of genes related to translation, amino acid metabolism and carbohydrate metabolism. Mutations of Blm10 at F2125/N2126 in its putative acetyl-lysine binding region abolished the Blm10-mediated regulation of gene expression. Conclusion: Blm10 promotes degradation of the core histones during transcription and regulates transcription especially during cellular aging, further supporting the critical role of PA200 in maintaining the stability of histone marks from the evolutionary view. These results should provide meaningful insights into the mechanisms underlying aging and the related diseases.


Biochemistry ◽  
2001 ◽  
Vol 40 (43) ◽  
pp. 13114-13123 ◽  
Author(s):  
Vassiliki Karantza ◽  
Ernesto Freire ◽  
Evangelos N. Moudrianakis

Genetics ◽  
2002 ◽  
Vol 160 (3) ◽  
pp. 961-973 ◽  
Author(s):  
Shan M Hays ◽  
Johanna Swanson ◽  
Eric U Selker

Abstract We have identified and characterized the complete complement of genes encoding the core histones of Neurospora crassa. In addition to the previously identified pair of genes that encode histones H3 and H4 (hH3 and hH4-1), we identified a second histone H4 gene (hH4-2), a divergently transcribed pair of genes that encode H2A and H2B (hH2A and hH2B), a homolog of the F/Z family of H2A variants (hH2Az), a homolog of the H3 variant CSE4 from Saccharomyces cerevisiae (hH3v), and a highly diverged H4 variant (hH4v) not described in other species. The hH4-1 and hH4-2 genes, which are 96% identical in their coding regions and encode identical proteins, were inactivated independently. Strains with inactivating mutations in either gene were phenotypically wild type, in terms of growth rates and fertility, but the double mutants were inviable. As expected, we were unable to isolate null alleles of hH2A, hH2B, or hH3. The genomic arrangement of the histone and histone variant genes was determined. hH2Az and the hH3-hH4-1 gene pair are on LG IIR, with hH2Az centromere-proximal to hH3-hH4-1 and hH3 centromere-proximal to hH4-1. hH3v and hH4-2 are on LG IIIR with hH3v centromere-proximal to hH4-2. hH4v is on LG IVR and the hH2A-hH2B pair is located immediately right of the LG VII centromere, with hH2A centromere-proximal to hH2B. Except for the centromere-distal gene in the pairs, all of the histone genes are transcribed toward the centromere. Phylogenetic analysis of the N. crassa histone genes places them in the Euascomycota lineage. In contrast to the general case in eukaryotes, histone genes in euascomycetes are few in number and contain introns. This may be a reflection of the evolution of the RIP (repeat-induced point mutation) and MIP (methylation induced premeiotically) processes that detect sizable duplications and silence associated genes.


2010 ◽  
Vol 24 (15n16) ◽  
pp. 3124-3130 ◽  
Author(s):  
HUI CONG LIU ◽  
XIU QING XU ◽  
WEI PING LI ◽  
YAN HONG GUO ◽  
LI-QUN ZHU

The shell material of microcapsules has an important effect on the electrolytic co-deposition behavior, the release of core material and the surface performance of composite coating. This paper discussed the tensile property and the stability of three shell materials including polyvinyl alcohol (PVA), gelatin and methyl cellulose (MC). It is found that these three shell materials have good mechanical strength and flexibility which are favorable to electrolytic co-deposition and stability of microcapsules in composite coating and that MC has well permeability and porosity which has a positive effect on the release of the core material in composite coating. Moreover, the study of the thermal properties and water vapor permeability of the three shell materials showed that their permeability improved with increase of temperature and humidity. In addition, the composite copper coating containing microcapsules with PVA, gelatin or MC as shell material was prepared respectively.


2007 ◽  
Vol 342-343 ◽  
pp. 505-508
Author(s):  
Sung Won Kim ◽  
Yun Sik Nam ◽  
Yeon Jin Min ◽  
Jong Ho Kim ◽  
Kwang Meyong Kim ◽  
...  

Stability and disintegration of natural polyelectrolyte complex microspheres for protein drugs delivery have been extensively investigated because of their great influence on the drug release patterns. In this study, we tested stability of microspheres with alginate (Alg) core layered by either chitosan (Chi) or glycol chitosan (GChi) by examining release profiles of fluorophorelabeled bovine serum albumin (BSA) and lysozyme (Lys) from the microspheres. While GChi shell was disintegrated quickly, Chi-shell microspheres showed good stability in PBS. Disintegration of the coated layer induced the core material instable. The results indicated that while the charges of the shell material provided additional diffusion barrier against the protein release, the key factor to hold the proteins inside the microspheres was the integrity of the outer coating layer.


2011 ◽  
Vol 8 (4) ◽  
pp. 1911-1915
Author(s):  
N. G. Nadkarni ◽  
K. V. Mangaonkar

Binary and ternary complexes of the type M-Y and M-X-Y [M = Mn(II), Ni(II), Cu(II) and Zn(II); X = 5-bromosalicylidene-4-methoxyaniline and Y = salicylidene-2,3-dimethylaniline] have been examined pH-metrically at 27±0.5°C and at constant ionic strength, μ = 0.1 M (KCl) in 75 : 25(v/v) 1,4-dioxne-water medium. The stability constants for binary (M-Y) and ternary (M-X-Y) systems were calculated.


2017 ◽  
Vol 23 (1) ◽  
pp. 15-27
Author(s):  
Chung-Won LEE ◽  
Yong-Seong KIM ◽  
Sung-Yong PARK ◽  
Dong-Gyun KIM ◽  
Gunn HEO

Centrifugal model testing has been widely used to study the stability of levees. However, there have been a limited number of physical studies on levees where the velocity of increasing water levels was considered. To investigate the behavior characteristics of reservoir levees with different velocities of increasing water levels, centrifugal model tests and seepage-deformation coupled analyses were conducted. Through this study, it was confirmed that increasing water levels at higher velocities induces dramatic increases in the displacement, plastic volumetric strain and risk of hydraulic fracturing occurring in the core of the levee. Hence, real-time monitoring of the displacement and the pore water pres­sure of a levee is important to ensure levee stability.


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