HIV-1 Nucleocapsid Traps Reverse Transcriptase on Nucleic Acid Substrates†

Biochemistry ◽  
2008 ◽  
Vol 47 (46) ◽  
pp. 12230-12240 ◽  
Author(s):  
Dina Grohmann ◽  
Julien Godet ◽  
Yves Mély ◽  
Jean-Luc Darlix ◽  
Tobias Restle
2019 ◽  
Vol 93 (11) ◽  
Author(s):  
Paul L. Boyer ◽  
Kevin Melody ◽  
Steven J. Smith ◽  
Linda L. Dunn ◽  
Chris Kline ◽  
...  

ABSTRACTTwo mutations, G112D and M230I, were selected in the reverse transcriptase (RT) of human immunodeficiency virus type 1 (HIV-1) by a novel nonnucleoside reverse transcriptase inhibitor (NNRTI). G112D is located near the HIV-1 polymerase active site; M230I is located near the hydrophobic region where NNRTIs bind. Thus, M230I could directly interfere with NNRTI binding but G112D could not. Biochemical and virological assays were performed to analyze the effects of these mutations individually and in combination. M230I alone caused a reduction in susceptibility to NNRTIs, while G112D alone did not. The G112D/M230I double mutant was less susceptible to NNRTIs than was M230I alone. In contrast, both mutations affected the ability of RT to incorporate nucleoside analogs. We suggest that the mutations interact with each other via the bound nucleic acid substrate; the nucleic acid forms part of the polymerase active site, which is near G112D. The positioning of the nucleic acid is influenced by its interactions with the “primer grip” region and could be influenced by the M230I mutation.IMPORTANCEAlthough antiretroviral therapy (ART) is highly successful, drug-resistant variants can arise that blunt the efficacy of ART. New inhibitors that are broadly effective against known drug-resistant variants are needed, although such compounds might select for novel resistance mutations that affect the sensitivity of the virus to other compounds. Compound 13 selects for resistance mutations that differ from traditional NNRTI resistance mutations. These mutations cause increased sensitivity to NRTIs, such as AZT.


1993 ◽  
Vol 21 (17) ◽  
pp. 3943-3949 ◽  
Author(s):  
Mogens KruhØfter ◽  
Claus Urbanke ◽  
Frank Grosse

Author(s):  
George R. Painter ◽  
Lois L. Wright ◽  
C. Webster Andrews ◽  
Nancy Cheng ◽  
Sam Hopkins ◽  
...  

2003 ◽  
Vol 77 (15) ◽  
pp. 8548-8554 ◽  
Author(s):  
John G. Julias ◽  
Mary Jane McWilliams ◽  
Stefan G. Sarafianos ◽  
W. Gregory Alvord ◽  
Edward Arnold ◽  
...  

ABSTRACT The crystal structure of human immunodeficiency virus type 1 (HIV-1) reverse transcriptase in a complex with an RNA-DNA template-primer identified amino acids in the connection domain that make specific contacts with the nucleic acid. We analyzed the effects of mutations in these amino acids by using a one-round HIV-1 vector. Mutations in amino acids in the connection domain generally had small effects on virus titers. To determine whether the mutations affected the level of RNase H activity or the specificity of RNase H cleavage, we used the two-long-terminal-repeat circle junction as a surrogate for the ends of linear viral DNA; specific RNase H cleavages determine the ends of the viral DNA. Several of the mutations in the connection domain affected the frequency of the generation of viral DNAs with aberrant ends. The mutation H361A had the largest effect on the titer and on the generation of DNAs with aberrant ends. H361 contacts the phosphate backbone of the nucleic acid in the same location as amino acid Y501 in the RNase H primer grip. Mutations at Y501 have been shown to decrease the virus titer and affect the specificity of RNase H cleavage. H361A affected the frequency of the generation of linear viral DNAs with aberrant ends, but in general the connection domain mutations had subtle effects on the efficiency of RNase H cleavage. The results of this study suggest that, in addition to its primary role in linking the polymerase and RNase H domains, the connection subdomain has a modest role in binding and positioning the nucleic acid.


2000 ◽  
Vol 275 (21) ◽  
pp. 16015-16022 ◽  
Author(s):  
Jason W. Rausch ◽  
B. K. Sathyanarayana ◽  
Marion K. Bona ◽  
Stuart F. J. Le Grice

Biochemistry ◽  
1993 ◽  
Vol 32 (29) ◽  
pp. 7466-7474 ◽  
Author(s):  
Amalendra Kumar ◽  
Hyeung Rak Kim ◽  
Robert W. Sobol ◽  
S. Patricia Becerra ◽  
Byeong Jae Lee ◽  
...  

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