scholarly journals Evidence for the Involvement of Acid/Base Chemistry in the Reaction Catalyzed by the Type II Isopentenyl Diphosphate/Dimethylallyl Diphosphate Isomerase fromStaphylococcus aureus†

Biochemistry ◽  
2008 ◽  
Vol 47 (8) ◽  
pp. 2547-2558 ◽  
Author(s):  
Christopher J. Thibodeaux ◽  
Steven O. Mansoorabadi ◽  
William Kittleman ◽  
Wei-chen Chang ◽  
Hung-wen Liu
Keyword(s):  
Isopentenyl Diphosphate ◽  
Type Ii ◽  
Acid Base ◽  
Dimethylallyl Diphosphate

scholarly journals QM/MM studies of the type II isopentenyl diphosphate–dimethylallyl diphosphate isomerase demonstrate a novel role for the flavin coenzyme

RSC Advances ◽  
2017 ◽  
Vol 7 (36) ◽  
pp. 22286-22293
Author(s):  
Qianqian Hou ◽  
Kang Wang ◽  
Feng Xu ◽  
Wenshen Zhang ◽  
Kejian Ji ◽  
...  
Keyword(s):  
Isopentenyl Diphosphate ◽  
Type Ii ◽  
Isopentenyl Pyrophosphate ◽  
Dimethylallyl Diphosphate ◽  
Dimethylallyl Pyrophosphate

The type II isopentenyl diphosphate:dimethylallyl diphosphate isomerase (IDI-2) catalyzes the reversible isomerization of isopentenyl pyrophosphate (IPP) and dimethylallyl pyrophosphate (DMAPP).

scholarly journals Stereochemical Studies of the Type II Isopentenyl Diphosphate-Dimethylallyl Diphosphate Isomerase Implicate the FMN Coenzyme in Substrate Protonation

ChemBioChem ◽  
2011 ◽  
Vol 13 (1) ◽  
pp. 42-46 ◽  
Author(s):  
Jordi Calveras ◽  
Christopher J. Thibodeaux ◽  
Steven O. Mansoorabadi ◽  
Hung-wen Liu
Keyword(s):  
Isopentenyl Diphosphate ◽  
Type Ii ◽  
Dimethylallyl Diphosphate

scholarly journals Genetic evidence of branching in the isoprenoid pathway for the production of isopentenyl diphosphate and dimethylallyl diphosphate inEscherichia coli

FEBS Letters ◽  
2000 ◽  
Vol 473 (3) ◽  
pp. 328-332 ◽  
Author(s):  
Manuel Rodrı́guez-Concepción ◽  
Narciso Campos ◽  
Luisa Marı́a Lois ◽  
Carlos Maldonado ◽  
Jean-François Hoeffler ◽  
...  
Keyword(s):  
Genetic Evidence ◽  
Isopentenyl Diphosphate ◽  
Inescherichia Coli ◽  
Isoprenoid Pathway ◽  
Dimethylallyl Diphosphate

scholarly journals Isoprenoid biosynthesis in higher plants and in Escherichia coli: on the branching in the methylerythritol phosphate pathway and the independent biosynthesis of isopentenyl diphosphate and dimethylallyl diphosphate

2002 ◽  
Vol 366 (2) ◽  
pp. 573-583 ◽  
Author(s):  
Jean-François HOEFFLER ◽  
Andréa HEMMERLIN ◽  
Catherine GROSDEMANGE-BILLIARD ◽  
Thomas J. BACH ◽  
Michel ROHMER
Keyword(s):  
Escherichia Coli ◽  
Higher Plants ◽  
Mevalonic Acid ◽  
Cell Suspension Cultures ◽  
Mep Pathway ◽  
Isopentenyl Diphosphate ◽  
Higher Plant ◽  
Methylerythritol Phosphate Pathway ◽  
Dimethylallyl Diphosphate ◽  
Deuterium Retention

In the bacterium Escherichia coli, the mevalonic-acid (MVA)-independent 2-C-methyl-d-erythritol 4-phosphate (MEP) pathway is characterized by two branches leading separately to isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The signature of this branching is the retention of deuterium in DMAPP and the deuterium loss in IPP after incorporation of 1-[4-2H]deoxy-d-xylulose ([4-2H]DX). Feeding tobacco BY-2 cell-suspension cultures with [4-2H]DX resulted in deuterium retention in the isoprene units derived from DMAPP, as well as from IPP in the plastidial isoprenoids, phytoene and plastoquinone, synthesized via the MEP pathway. This labelling pattern represents direct evidence for the presence of the DMAPP branch of the MEP pathway in a higher plant, and shows that IPP can be synthesized from DMAPP in plant plastids, most probably via a plastidial IPP isomerase.

The deoxyxylulose phosphate pathway of isoprenoid biosynthesis. Discovery and function of the ispDEFGH genes and their cognate enzymes

2003 ◽  
Vol 75 (2-3) ◽  
pp. 393-405 ◽  
Author(s):  
F. Rohdich ◽  
Stefan Hecht ◽  
Adelbert Bacher ◽  
Wolfgang Eisenreich
Keyword(s):  
Biosynthetic Pathway ◽  
Mevalonate Pathway ◽  
Isoprenoid Biosynthesis ◽  
Catalytic Action ◽  
Isopentenyl Diphosphate ◽  
Dimethylallyl Diphosphate ◽  
And Function

Isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) serve as the universal precursors for the biosynthesis of terpenes. Besides the well-known mevalonate pathway, a second biosynthetic pathway conducive to IPP and DMAPP via 1-deoxy-d-xylulose-5-phosphate and 2C-methyl-d-erythritol-4-phosphate has been discovered recently in plants and certain eubacteria. 2C-Methyl-d-erythritol-4-phosphate, the first committed intermediate of the deoxyxylulose phosphate pathway, is converted into 2C-methyl-d-erythritol 2,4-cyclodiphosphate by the catalytic action of three enzymes specified by the ispDEF genes. The cyclic diphosphate is reductively opened by the IspG protein affording 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate. This compound can be converted into IPP as well as DMAPP by the catalytic action of IspH protein. The enzymes of this pathway are potential targets for novel antibacterial, antimalarial, and herbicide agents.

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