Structure and Conformational Dynamics of the Domain 5 RNA Hairpin of a Bacterial Group II Intron Revealed by Solution Nuclear Magnetic Resonance and Molecular Dynamics Simulations

Maria Pechlaner; Roland K. O. Sigel; Wilfred F. van Gunsteren; Jožica Dolenc

doi:10.1021/bi400784r

Structure and Conformational Dynamics of the Domain 5 RNA Hairpin of a Bacterial Group II Intron Revealed by Solution Nuclear Magnetic Resonance and Molecular Dynamics Simulations

Biochemistry ◽

10.1021/bi400784r ◽

2013 ◽

Vol 52 (40) ◽

pp. 7099-7113 ◽

Cited By ~ 8

Author(s):

Maria Pechlaner ◽

Roland K. O. Sigel ◽

Wilfred F. van Gunsteren ◽

Jožica Dolenc

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Molecular Dynamics Simulations ◽

Conformational Dynamics ◽

Group Ii Intron ◽

Bacterial Group ◽

Dynamics Simulations ◽

Rna Hairpin ◽

Solution Nuclear Magnetic Resonance

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Solution Nuclear Magnetic Resonance Structure and Molecular Dynamics Simulations of a Murine 18.5 kDa Myelin Basic Protein Segment (S72–S107) in Association with Dodecylphosphocholine Micelles

Biochemistry ◽

10.1021/bi300998x ◽

2012 ◽

Vol 51 (38) ◽

pp. 7475-7487 ◽

Cited By ~ 23

Author(s):

Mumdooh A. M. Ahmed ◽

Miguel De Avila ◽

Eugenia Polverini ◽

Kyrylo Bessonov ◽

Vladimir V. Bamm ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Myelin Basic Protein ◽

Molecular Dynamics Simulations ◽

Basic Protein ◽

Resonance Structure ◽

Nuclear Magnetic Resonance Structure ◽

Dynamics Simulations ◽

Solution Nuclear Magnetic Resonance

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Conformational Analysis of Heparin-Analogue Pentasaccharides by Nuclear Magnetic Resonance Spectroscopy and Molecular Dynamics Simulations

Journal of Chemical Information and Modeling ◽

10.1021/acs.jcim.1c00200 ◽

2021 ◽

Author(s):

Gábor Balogh ◽

Tamás Gyöngyösi ◽

István Timári ◽

Mihály Herczeg ◽

Anikó Borbás ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Magnetic Resonance Spectroscopy ◽

Conformational Analysis ◽

Molecular Dynamics Simulations ◽

Nuclear Magnetic Resonance Spectroscopy ◽

Resonance Spectroscopy ◽

Dynamics Simulations ◽

Nuclear Magnetic

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Molecular Recognition of the Thomsen-Friedenreich Antigen–Threonine Conjugate by Adhesion/Growth Regulatory Galectin-3: Nuclear Magnetic Resonance Studies and Molecular Dynamics Simulations

Biochemistry ◽

10.1021/bi300761s ◽

2012 ◽

Vol 51 (37) ◽

pp. 7278-7289 ◽

Cited By ~ 25

Author(s):

Austin B. Yongye ◽

Luis Calle ◽

Ana Ardá ◽

Jesús Jiménez-Barbero ◽

Sabine André ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Molecular Recognition ◽

Molecular Dynamics Simulations ◽

Magnetic Resonance Studies ◽

Galectin 3 ◽

Dynamics Simulations ◽

Nuclear Magnetic

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Dynamic aspects of antibody:oligosaccharide complexes characterized by molecular dynamics simulations and saturation transfer difference nuclear magnetic resonance

Glycobiology ◽

10.1093/glycob/cwr059 ◽

2011 ◽

Vol 21 (12) ◽

pp. 1570-1579 ◽

Cited By ~ 13

Author(s):

François-Xavier Theillet ◽

Martin Frank ◽

Brigitte Vulliez-Le Normand ◽

Catherine Simenel ◽

Sylviane Hoos ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Molecular Dynamics Simulations ◽

Saturation Transfer ◽

Saturation Transfer Difference ◽

Dynamics Simulations ◽

Nuclear Magnetic

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Identification of Preferred Multimodal Ligand Binding Regions on IgG1 FC using Nuclear Magnetic Resonance and Molecular Dynamics Simulations

10.22541/au.159611515.59404427 ◽

2020 ◽

Author(s):

Ronak Gudhka ◽

Camille Bilodeau ◽

Scott McCallum ◽

Mark McCoy ◽

David Roush ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Ligand Binding ◽

Molecular Dynamics Simulations ◽

Binding Regions ◽

Dynamics Simulations ◽

Nuclear Magnetic

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Molecular Dynamics Simulations as a Complement to Nuclear Magnetic Resonance and X-Ray Diffraction Measurements

Methods in Membrane Lipids ◽

10.1385/1-59745-519-9:89 ◽

2007 ◽

pp. 89-102

Author(s):

Scott E. Feller

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Molecular Dynamics Simulations ◽

X Ray Diffraction ◽

X Ray ◽

Dynamics Simulations ◽

Nuclear Magnetic

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Fluid-solid phase transition of n-alkane mixtures: Coarse-grained molecular dynamics simulations and diffusion-ordered spectroscopy nuclear magnetic resonance

Scientific Reports ◽

10.1038/s41598-018-37799-7 ◽

2019 ◽

Vol 9 (1) ◽

Cited By ~ 11

Author(s):

S. Shahruddin ◽

G. Jiménez-Serratos ◽

G. J. P. Britovsek ◽

O. K. Matar ◽

E. A. Müller

Keyword(s):

Phase Transition ◽

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Molecular Dynamics Simulations ◽

Solid Phase ◽

Coarse Grained ◽

Solid Phase Transition ◽

Dynamics Simulations ◽

And Diffusion

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Conformation of a Trimannoside Bound to Mannose-Binding Protein by Nuclear Magnetic Resonance and Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/s0006-3495(02)75610-5 ◽

2002 ◽

Vol 82 (5) ◽

pp. 2683-2699 ◽

Cited By ~ 16

Author(s):

Eric W. Sayers ◽

James H. Prestegard

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Molecular Dynamics Simulations ◽

Binding Protein ◽

Mannose Binding Protein ◽

Mannose Binding ◽

Dynamics Simulations ◽

Nuclear Magnetic

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Probing multimodal ligand binding regions on ubiquitin using nuclear magnetic resonance, chromatography, and molecular dynamics simulations

Journal of Chromatography A ◽

10.1016/j.chroma.2011.12.101 ◽

2012 ◽

Vol 1229 ◽

pp. 113-120 ◽

Cited By ~ 21

Author(s):

Melissa A. Holstein ◽

Wai Keen Chung ◽

Siddharth Parimal ◽

Alexander S. Freed ◽

Blanca Barquera ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Ligand Binding ◽

Molecular Dynamics Simulations ◽

Binding Regions ◽

Dynamics Simulations ◽

Nuclear Magnetic

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Conformational Analysis of Aliskiren, a Potent Renin Inhibitor, Using High-Resolution Nuclear Magnetic Resonance and Molecular Dynamics Simulations

Journal of Chemical Information and Modeling ◽

10.1021/ci200130m ◽

2011 ◽

Vol 51 (9) ◽

pp. 2386-2397 ◽

Cited By ~ 2

Author(s):

Minos-Timotheos Matsoukas ◽

Panagiotis Zoumpoulakis ◽

Theodore Tselios

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

High Resolution ◽

Conformational Analysis ◽

Molecular Dynamics Simulations ◽

Renin Inhibitor ◽

Dynamics Simulations ◽

Nuclear Magnetic

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