DNA-Stimulated Assembly of Oligomeric Bacteriophage 434 Repressor:  Evidence for Cooperative Binding by Recruitment†

Biochemistry ◽  
2003 ◽  
Vol 42 (14) ◽  
pp. 4253-4264 ◽  
Author(s):  
Mihai Ciubotaru ◽  
Gerald B. Koudelka
Keyword(s):  
Cooperative Binding ◽  
Bacteriophage 434 ◽  
Bacteriophage 434 Repressor ◽  
434 Repressor

scholarly journals The Bacteriophage 434 Repressor Dimer Preferentially Undergoes Autoproteolysis by an Intramolecular Mechanism

2005 ◽  
Vol 187 (16) ◽  
pp. 5624-5630 ◽  
Author(s):  
Barbara C. McCabe ◽  
David R. Pawlowski ◽  
Gerald B. Koudelka
Keyword(s):  
Dna Damage ◽  
Active Sites ◽  
Sos Response ◽  
Lambdoid Phage ◽  
Lambdoid Prophage ◽  
Operator Binding ◽  
Bacteriophage 434 ◽  
Bacteriophage 434 Repressor ◽  
434 Repressor ◽  
Intramolecular Mechanism

ABSTRACT Inactivation of the lambdoid phage repressor protein is necessary to induce lytic growth of a lambdoid prophage. Activated RecA, the mediator of the host SOS response to DNA damage, causes inactivation of the repressor by stimulating the repressor's nascent autocleavage activity. The repressor of bacteriophage lambda and its homolog, LexA, preferentially undergo RecA-stimulated autocleavage as free monomers, which requires that each monomer mediates its own (intramolecular) cleavage. The cI repressor of bacteriophage 434 preferentially undergoes autocleavage as a dimer specifically bound to DNA, opening the possibility that one 434 repressor subunit may catalyze proteolysis of its partner subunit (intermolecular cleavage) in the DNA-bound dimer. Here, we first identified and mutagenized the residues at the cleavage and active sites of 434 repressor. We utilized the mutant repressors to show that the DNA-bound 434 repressor dimer overwhelmingly prefers to use an intramolecular mechanism of autocleavage. Our data suggest that the 434 repressor cannot be forced to use an intermolecular cleavage mechanism. Based on these data, we propose a model in which the cleavage-competent conformation of the repressor is stabilized by operator binding.

scholarly journals Effect of Salt Shock on Stability of λimm434 Lysogens

2007 ◽  
Vol 189 (8) ◽  
pp. 3115-3123 ◽  
Author(s):  
Paul Shkilnyj ◽  
Gerald B. Koudelka
Keyword(s):  
Salt Stress ◽  
Ionic Composition ◽  
Monovalent Cation ◽  
Growth Media ◽  
Bacterial Cells ◽  
Salt Shock ◽  
Phage Production ◽  
Bacteriophage 434 ◽  
Bacteriophage 434 Repressor ◽  
434 Repressor

ABSTRACT The affinities of the bacteriophage 434 repressor for its various binding sites depend on the type and/or concentration of monovalent cations. The ability of bacteriophage 434 repressor to govern the lysis-lysogeny decision depends on the DNA binding activities of the phage's cI repressor protein. We wished to determine whether changes in the intracellular ionic environment influence the lysis-lysogeny decision of the bacteriophage λ imm434 . Our findings show that the ionic composition within bacterial cells varies with the cation concentration in the growth media. When λ imm434 lysogens were grown to mid-log or stationary phase and subsequently incubated in media with increasing monovalent salt concentrations, we observed a salt concentration-dependent increase in the frequency of bacteriophage spontaneous induction. We also found that the frequency of spontaneous induction varied with the type of monovalent cation in the medium. The salt-dependent increase in phage production was unaffected by a recA mutation. These findings indicate that the salt-dependent increase in phage production is not caused by activation of the SOS pathway. Instead, our evidence suggests that salt stress induces this lysogenic bacteriophage by interfering with 434 repressor-DNA interactions. We speculate that the salt-dependent increase in spontaneous induction is due to a direct effect on the repressor's affinity for DNA. Regardless of the precise mechanism, our findings demonstrate that salt stress can regulate the phage lysis-lysogeny switch.

Synthesis and mass spectrometric characterisation of the N-terminal (1-63) DNA-binding domain of the bacteriophage 434 repressor cI

1997 ◽  
Vol 3 (1) ◽  
pp. 151
Author(s):  
Piergiorgio Percipalle ◽  
Sandor Pongor ◽  
Sotir Zakhariev ◽  
Corrado Guarnaccia ◽  
Rosaria Saletti ◽  
...  
Keyword(s):  
Dna Binding ◽  
Mass Spectrometric ◽  
Binding Domain ◽  
Dna Binding Domain ◽  
Bacteriophage 434 ◽  
Bacteriophage 434 Repressor ◽  
434 Repressor

scholarly journals The Preferred Substrate for RecA-Mediated Cleavage of Bacteriophage 434 Repressor Is the DNA-Bound Dimer

2004 ◽  
Vol 186 (1) ◽  
pp. 1-7 ◽  
Author(s):  
David R. Pawlowski ◽  
Gerald B. Koudelka
Keyword(s):  
Dna Binding ◽  
Transcriptional Regulatory ◽  
Dna Binding Site ◽  
Cleavage Step ◽  
Regulatory Functions ◽  
Bacteriophage 434 ◽  
Dna Complex ◽  
Bacteriophage 434 Repressor ◽  
434 Repressor

ABSTRACT Induction of a lysogen of a lambdoid bacteriophage usually involves RecA-stimulated autoproteolysis of the bacteriophage repressor protein. Previous work on the phage repressors showed that the monomeric form of the protein is the target of RecA. Our previous work indicated that in the case of bacteriophage 434, virtually none of the repressor is present as a monomer in vivo. Hence, if the repressor in a lysogen is present as a dimer, how can RecA-stimulated autoproteolysis play a role in bacteriophage induction? We examined this question by determining the rate of RecA-stimulated 434 repressor cleavage as a function of repressor concentration and added DNA. Our results show that binding of 434 repressor to a specific DNA binding site dramatically increases the velocity of repressor autocleavage compared to the velocity of cleavage of the monomer and concentration-induced dimer. DNA binding-deficient hemidimers formed between the intact repressor and its C-terminal domain fragment have a lower rate of cleavage than DNA-bound dimers. These results show that the DNA-bound 434 repressor dimer, which is the form of the repressor that is required for its transcriptional regulatory functions, is the preferred form for RecA-stimulated autocleavage. We also show that the rate of repressor autocleavage is influenced by the sequence of the bound DNA. Kinetic analysis of the autocleavage reaction indicated that the DNA sequence influences the velocity of 434 repressor autocleavage by affecting the affinity of the repressor-DNA complex for RecA, not the chemical cleavage step. Regardless of the mechanism, the finding that the presence and precise sequence of DNA modulate the autocleavage reaction shows that DNA allosterically affects the function of 434 repressor.

DNA-induced conformational changes in bacteriophage 434 repressor

1999 ◽  
Vol 294 (4) ◽  
pp. 859-873 ◽  
Author(s):  
Mihai Ciubotaru ◽  
Frank V Bright ◽  
Christine M Ingersoll ◽  
Gerald B Koudelka
Keyword(s):  
Conformational Changes ◽  
Bacteriophage 434 ◽  
Bacteriophage 434 Repressor ◽  
434 Repressor
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