Refinement of the solution structure of the DNA hexamer 5'd(GCATGC)2: combined use of nuclear magnetic resonance and restrained molecular dynamics

Michael Nilges; G. Marius Clore; Angela M. Gronenborn; Axel T. Brunger; Martin Karplus; Lennart Nilsson

doi:10.1021/bi00386a068

Refinement of the solution structure of the DNA hexamer 5'd(GCATGC)2: combined use of nuclear magnetic resonance and restrained molecular dynamics

Biochemistry ◽

10.1021/bi00386a068 ◽

1987 ◽

Vol 26 (12) ◽

pp. 3718-3733 ◽

Cited By ~ 64

Author(s):

Michael Nilges ◽

G. Marius Clore ◽

Angela M. Gronenborn ◽

Axel T. Brunger ◽

Martin Karplus ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Solution Structure ◽

Combined Use ◽

Restrained Molecular Dynamics ◽

Nuclear Magnetic

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Refinement of the solution structure of the DNA dodecamer 5'd(CGCGPATTCGCG)2 containing a stable purine-thymine base pair: combined use of nuclear magnetic resonance and restrained molecular dynamics

Biochemistry ◽

10.1021/bi00411a042 ◽

1988 ◽

Vol 27 (11) ◽

pp. 4185-4197 ◽

Cited By ~ 32

Author(s):

G. Marius Clore ◽

Hartmut Oschkinat ◽

Larry W. McLaughlin ◽

Fritz Benseler ◽

Claudia Scalfi Happ ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Base Pair ◽

Solution Structure ◽

Combined Use ◽

Dna Dodecamer ◽

Restrained Molecular Dynamics ◽

Nuclear Magnetic

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Refinement of the solution structure of the DNA decamer 5'd(CTGGATCCAG)2: combined use of nuclear magnetic resonance and restrained molecular dynamics

Biochemistry ◽

10.1021/bi00386a069 ◽

1987 ◽

Vol 26 (12) ◽

pp. 3734-3744 ◽

Cited By ~ 48

Author(s):

Michael Nilges ◽

G. Marius Clore ◽

Angela M. Gronenborn ◽

Norbert Piel ◽

Larry W. McLaughlin

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Solution Structure ◽

Combined Use ◽

Restrained Molecular Dynamics ◽

Nuclear Magnetic

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Refinement of the solution structure of the ribonucleotide 5'r(GCAUGC)2: combined use of nuclear magnetic resonance and restrained molecular dynamics

Biochemistry ◽

10.1021/bi00405a053 ◽

1988 ◽

Vol 27 (5) ◽

pp. 1735-1743 ◽

Cited By ~ 20

Author(s):

Claudia Scalfi Happ ◽

Erwin Happ ◽

Michael Nilges ◽

Angela M. Gronenborn ◽

G. Marius Clore

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Solution Structure ◽

Combined Use ◽

Restrained Molecular Dynamics ◽

Nuclear Magnetic

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Refinement of the solution structure of the RNA-DNA hybrid 5′-[r(GCA)d(TGC)]2 Combined use of nuclear magnetic resonance and restrained molecular dynamics

FEBS Letters ◽

10.1016/0014-5793(88)80286-2 ◽

1988 ◽

Vol 236 (1) ◽

pp. 62-70 ◽

Cited By ~ 4

Author(s):

Claudia Scalfi Happ ◽

Erwin Happ ◽

G.Marius Clore ◽

Angela M. Gronenborn

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Solution Structure ◽

Combined Use ◽

Restrained Molecular Dynamics ◽

Nuclear Magnetic

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Solution structure of human insulin-like growth factor 1: a nuclear magnetic resonance and restrained molecular dynamics study

Biochemistry ◽

10.1021/bi00236a022 ◽

1991 ◽

Vol 30 (22) ◽

pp. 5484-5491 ◽

Cited By ~ 101

Author(s):

Robert M. Cooke ◽

Timothy S. Harvey ◽

Iain D. Campbell

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Growth Factor ◽

Magnetic Resonance ◽

Human Insulin ◽

Solution Structure ◽

Insulin Like Growth Factor ◽

Restrained Molecular Dynamics ◽

Nuclear Magnetic

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The three-dimensional structure of α1-purothionin in solution: combined use of nuclear magnetic resonance, distance geometry and restrained molecular dynamics

The EMBO Journal ◽

10.1002/j.1460-2075.1986.tb04557.x ◽

1986 ◽

Vol 5 (10) ◽

pp. 2729-2735 ◽

Cited By ~ 186

Author(s):

G. Marius Clore ◽

Michael Nilges ◽

Dinesh K. Sukumaran ◽

Axel T. Brünger ◽

Martin Karplus ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Distance Geometry ◽

Three Dimensional ◽

Dimensional Structure ◽

Three Dimensional Structure ◽

Combined Use ◽

Restrained Molecular Dynamics ◽

Nuclear Magnetic

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Three-dimensional structure of phoratoxin in solution: combined use of nuclear magnetic resonance, distance geometry, and restrained molecular dynamics

Biochemistry ◽

10.1021/bi00380a037 ◽

1987 ◽

Vol 26 (6) ◽

pp. 1732-1745 ◽

Cited By ~ 58

Author(s):

G. Marius Clore ◽

Dinesh K. Sukumaran ◽

Michael Nilges ◽

Angela M. Gronenborn

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Distance Geometry ◽

Three Dimensional ◽

Dimensional Structure ◽

Three Dimensional Structure ◽

Combined Use ◽

Restrained Molecular Dynamics ◽

Nuclear Magnetic

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Solution structure of neurotoxin I from the sea anemone Stichodactyla helianthus. A nuclear magnetic resonance, distance geometry, and restrained molecular dynamics study.

Journal of Biological Chemistry ◽

10.1016/s0021-9258(19)38261-4 ◽

1990 ◽

Vol 265 (22) ◽

pp. 13016-13028

Author(s):

R H Fogh ◽

W R Kem ◽

R S Norton

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Solution Structure ◽

Distance Geometry ◽

Sea Anemone ◽

Restrained Molecular Dynamics ◽

Nuclear Magnetic

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[1] How to generate accurate solution structures of double-helical nucleic acid fragments using nuclear magnetic resonance and restrained molecular dynamics

Methods in Enzymology - Nuclear Magnetic Resonance and Nucleic Acids ◽

10.1016/s0076-6879(95)61003-0 ◽

1995 ◽

pp. 3-44 ◽

Cited By ~ 32

Author(s):

Uli Schmitz ◽

Thomas L. James

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Nucleic Acid ◽

Magnetic Resonance ◽

Accurate Solution ◽

Solution Structures ◽

Restrained Molecular Dynamics ◽

Nuclear Magnetic

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Solution structure of FK506 from nuclear magnetic resonance and molecular dynamics

Journal of the American Chemical Society ◽

10.1021/ja00181a078 ◽

1990 ◽

Vol 112 (25) ◽

pp. 9434-9436 ◽

Cited By ~ 34

Author(s):

Peter Karuso ◽

Horst Kessler ◽

Dale F. Mierke

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Solution Structure ◽

Nuclear Magnetic

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