Anionic phospholipids are essential for .alpha.-helix formation of the signal peptide of prePhoE upon interaction with phospholipid vesicles

Biochemistry ◽  
1992 ◽  
Vol 31 (6) ◽  
pp. 1672-1677 ◽  
Author(s):  
Rob C. A. Keller ◽  
J. Antoinette Killian ◽  
Ben De Kruijff
Keyword(s):  
Signal Peptide ◽  
Alpha Helix ◽  
Phospholipid Vesicles ◽  
Anionic Phospholipids ◽  
Helix Formation

scholarly journals Circular-dichroism and fluorescence studies on melittin: effects of C-terminal modifications on tetramer formation and binding to phospholipid vesicles

1995 ◽  
Vol 305 (3) ◽  
pp. 785-790 ◽  
Author(s):  
M van Veen ◽  
G N Georgiou ◽  
A F Drake ◽  
R J Cherry
Keyword(s):  
Fluorescence Probe ◽  
Alpha Helix ◽  
Lipid Vesicles ◽  
Lipid Binding ◽  
Phospholipid Vesicles ◽  
Tryptophan Residue ◽  
Fluorescence Studies ◽  
Helix Formation ◽  
Tetramer Formation ◽  
Self Association

Studies were performed on a series of melittin analogues with selective alterations to the positively charged amino acid sequence at the C-terminus. Fluorescence studies were undertaken using the sole tryptophan residue in the analogues as an intrinsic fluorescence probe for indications of tetramer formation in free solution, and binding and insertion of the melittins into phospholipid bilayers. Studies were performed under conditions of low-salt buffer with increasing concentrations of phosphate added to promote self-association of the melittin monomers, and also in the presence of phospholipid vesicles. C.d. studies were also performed under conditions of increasing phosphate concentrations and in the presence of lipid vesicles to monitor the alpha-helical content of the melittins. It was found that selective replacement of the C-terminal basic amino acids by glutamine has different effects on self-association, alpha-helix formation and lipid binding of melittin.

ALPHA-HELIX FORMATION IN C-PEPTIDE RNASE-A INVESTIGATED BY PARALLEL TEMPERING SIMULATIONS

2007 ◽  
Vol 18 (01) ◽  
pp. 91-98 ◽  
Author(s):  
GÖKHAN GÖKOĞLU ◽  
TARIK ÇELİK
Keyword(s):  
Energy State ◽  
Minimum Energy ◽  
Alpha Helix ◽  
Salt Bridge ◽  
Rnase A ◽  
Parallel Tempering ◽  
Implicit Solvent ◽  
C Peptide ◽  
Helix Formation ◽  
Α Helix

We have performed parallel tempering simulations of a 13-residue peptide fragment of ribonuclease-A, c-peptide, in implicit solvent with constant dielectric permittivity. This peptide has a strong tendency to form α-helical conformations in solvent as suggested by circular dichroism (CD) and nuclear magnetic resonance (NMR) experiments. Our results demonstrate that 5th and 8–12 residues are in the α-helical region of the Ramachandran map for global minimum energy state in solvent environment. Effects of salt bridge formation on stability of α-helix structure are discussed.

A Model of a Protein $${\alpha}$$ Helix Formation Based on the Two-Particle Model of Motion in the Lennard-Jones Potential

2021 ◽  
Vol 76 (4) ◽  
pp. 226-232
Author(s):  
K. A. Zuev ◽  
N. T. Levashova ◽  
E. V. Malyshko ◽  
A. E. Sidorova ◽  
V. A. Tverdislov
Keyword(s):  
Alpha Helix ◽  
Particle Model ◽  
Lennard Jones Potential ◽  
Jones Potential ◽  
Lennard Jones ◽  
Helix Formation

scholarly journals The Rare IL22RA2 Signal Peptide Coding Variant rs28385692 Decreases Secretion of IL-22BP Isoform-1, -2 and -3 and Is Associated with Risk for Multiple Sclerosis

Cells ◽  
2020 ◽  
Vol 9 (1) ◽  
pp. 175
Author(s):  
Paloma Gómez-Fernández ◽  
Aitzkoa Lopez de Lapuente Portilla ◽  
Ianire Astobiza ◽  
Jorge Mena ◽  
Andoni Urtasun ◽  
...  
Keyword(s):  
Multiple Sclerosis ◽  
Signal Peptide ◽  
Alpha Helix ◽  
In Silico Analysis ◽  
Case Control ◽  
Protein Isoforms ◽  
Reference Allele ◽  
Single Nucleotide ◽  
Full Dataset ◽  
Control Dataset

The IL22RA2 locus is associated with risk for multiple sclerosis (MS) but causative variants are yet to be determined. In a single nucleotide polymorphism (SNP) screen of this locus in a Basque population, rs28385692, a rare coding variant substituting Leu for Pro at position 16 emerged significantly (p = 0.02). This variant is located in the signal peptide (SP) shared by the three secreted protein isoforms produced by IL22RA2 (IL-22 binding protein-1(IL-22BPi1), IL-22BPi2 and IL-22BPi3). Genotyping was extended to a Europe-wide case-control dataset and yielded high significance in the full dataset (p = 3.17 × 10−4). Importantly, logistic regression analyses conditioning on the main known MS-associated SNP at this locus, rs17066096, revealed that this association was independent from the primary association signal in the full case-control dataset. In silico analysis predicted both disruption of the alpha helix of the H-region of the SP and decreased hydrophobicity of this region, ultimately affecting the SP cleavage site. We tested the effect of the p.Leu16Pro variant on the secretion of IL-22BPi1, IL-22BPi2 and IL-22BPi3 and observed that the Pro16 risk allele significantly lowers secretion levels of each of the isoforms to around 50%–60% in comparison to the Leu16 reference allele. Thus, our study suggests that genetically coded decreased levels of IL-22BP isoforms are associated with augmented risk for MS.

The Mechanism of alpha-Helix Formation by Peptides

1992 ◽  
Vol 21 (1) ◽  
pp. 95-118 ◽  
Author(s):  
J. Martin Scholtz ◽  
Robert L. Baldwin
Keyword(s):  
Alpha Helix ◽  
Helix Formation

Epitopes of adhesion-perturbing monoclonal antibodies map within a predicted alpha-helical domain of the integrin beta 1 subunit

1997 ◽  
Vol 110 (20) ◽  
pp. 2619-2628
Author(s):  
D.T. Shih ◽  
D. Boettiger ◽  
C.A. Buck
Keyword(s):  
Ligand Binding ◽  
Critical Role ◽  
Alpha Helix ◽  
Cation Binding ◽  
Affinity Column ◽  
Integrin Subunit ◽  
Amino Acid Residues ◽  
Helix Formation ◽  
Ligand Interactions ◽  
Integrin Ligand

Several recent studies have demonstrated the involvement of various domains of the beta 1 integrin subunit in ligand binding. Thus, specific amino acids have been shown to be important in divalent cation binding, and others have been implicated by peptide crosslinking to play an intimate role in integrin-ligand interactions. Added to these data are previous observations that a group of adhesion-blocking anti-chicken beta 1 antibodies mapped within the first 160 amino acid residues of the subunit. These observations suggested that this region plays a critical role in integrin ligand recognition. In order to further define the domain in which the epitopes for these antibodies are clustered, a series of mouse/chicken chimeric beta 1 constructs were examined for their reactivity with each of these antibodies. Most of the antibodies recognize a region between residues 124 to 160 of the chicken beta 1 subunit. Computer modeling predicted a possible amphipathic alpha-helical configuration for the region between residues 141 to 160. Consistent with this prediction, circular dichroism and NMR analysis revealed a tendency for a synthetic peptide containing these residues to form an alpha-helix. The significance of this structural characteristic was demonstrated by a mutation at residue 149 that disrupted the alpha-helix formation and resulted in a loss of the ability to form heterodimers with alpha subunits, localize to focal contacts, or be transported to the cell surface. The direct involvement of residues 141 to 160 in ligand binding was supported by the ability of a peptide with this sequence to elute integrins from a fibronectin affinity column. Thus, our data suggest that residues 141 to 160 of the integrin beta 1 subunit, when arranged in an alpha-helix configuration, participate in ligand binding.

An Improved Synthesis of a Template for .alpha.-Helix Formation

1995 ◽  
Vol 60 (2) ◽  
pp. 454-457 ◽  
Author(s):  
Kim F. McClure ◽  
Peter Renold ◽  
D. S. Kemp
Keyword(s):  
Alpha Helix ◽  
Helix Formation
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