Proton, nitrogen-15, and carbon-13 NMR signal assignments of IIIGlc a signal-transducing protein of Escherichia coli, using three-dimensional triple-resonance techniques

Biochemistry ◽  
1991 ◽  
Vol 30 (41) ◽  
pp. 10043-10057 ◽  
Author(s):  
Jeffrey G. Pelton ◽  
Dennis A. Torchia ◽  
Norman D. Meadow ◽  
Cing Yuen Wong ◽  
Saul Roseman
Author(s):  
G. Stöffler ◽  
R.W. Bald ◽  
J. Dieckhoff ◽  
H. Eckhard ◽  
R. Lührmann ◽  
...  

A central step towards an understanding of the structure and function of the Escherichia coli ribosome, a large multicomponent assembly, is the elucidation of the spatial arrangement of its 54 proteins and its three rRNA molecules. The structural organization of ribosomal components has been investigated by a number of experimental approaches. Specific antibodies directed against each of the 54 ribosomal proteins of Escherichia coli have been performed to examine antibody-subunit complexes by electron microscopy. The position of the bound antibody, specific for a particular protein, can be determined; it indicates the location of the corresponding protein on the ribosomal surface.The three-dimensional distribution of each of the 21 small subunit proteins on the ribosomal surface has been determined by immuno electron microscopy: the 21 proteins have been found exposed with altogether 43 antibody binding sites. Each one of 12 proteins showed antibody binding at remote positions on the subunit surface, indicating highly extended conformations of the proteins concerned within the 30S ribosomal subunit; the remaining proteins are, however, not necessarily globular in shape (Fig. 1).


1994 ◽  
Vol 116 (14) ◽  
pp. 6472-6473 ◽  
Author(s):  
John P. Marino ◽  
Harald Schwalbe ◽  
Clemens Anklin ◽  
Wolfgang Bermel ◽  
Donald M. Crothers ◽  
...  

1985 ◽  
Vol 184 (1) ◽  
pp. 53-66 ◽  
Author(s):  
Alain Expert-Bezançon ◽  
Paul L. Wollenzien

2013 ◽  
Vol 699 ◽  
pp. 251-256
Author(s):  
T. Hisajima ◽  
L. Mao ◽  
K. Shinzato ◽  
M. Nakano ◽  
J. Suehiro

Thispaper reports a novel method to concentrate bacteria in three-dimension by negative dielectrophoretic (n-DEP) force in a microchannel. This was achieved by placing a thin dielectric layer on one of a pair of parallel plate electrodes. The dielectric layer having a home-plate like pentagonal shape, forms a gradient of electric field causing n-DEP. A three-dimensional numerical simulation of bacteria trajectory predicts that bacteria flowing a microchannel were three-dimensionally concentrated beneath the tip of the pentagonal dielectric thin layer. The trajectory and concentration of bacteria under n-DEP force were also experimentally confirmed using Escherichia coli cells. Bacteria moved along edges of the dielectric layer and were pushed to the opposite electrode, resulting in their concentration in three-dimension. The proposed device might be applicable to selective concentration of bacteria depending on their dielectric properties.


2008 ◽  
Vol 190 (22) ◽  
pp. 7479-7490 ◽  
Author(s):  
Thithiwat May ◽  
Satoshi Okabe

ABSTRACT It has been shown that Escherichia coli harboring the derepressed IncFI and IncFII conjugative F plasmids form complex mature biofilms by using their F-pilus connections, whereas a plasmid-free strain forms only patchy biofilms. Therefore, in this study we investigated the contribution of a natural IncF conjugative F plasmid to the formation of E. coli biofilms. Unlike the presence of a derepressed F plasmid, the presence of a natural IncF F plasmid promoted biofilm formation by generating the cell-to-cell mating F pili between pairs of F+ cells (approximately two to four pili per cell) and by stimulating the formation of colanic acid and curli meshwork. Formation of colanic acid and curli was required after the initial deposition of F-pilus connections to generate a three-dimensional mushroom-type biofilm. In addition, we demonstrated that the conjugative factor of F plasmid, rather than a pilus synthesis function, was involved in curli production during biofilm formation, which promoted cell-surface interactions. Curli played an important role in the maturation process. Microarray experiments were performed to identify the genes involved in curli biosynthesis and regulation. The results suggested that a natural F plasmid was more likely an external activator that indirectly promoted curli production via bacterial regulatory systems (the EnvZ/OmpR two-component regulators and the RpoS and HN-S global regulators). These data provided new insights into the role of a natural F plasmid during the development of E. coli biofilms.


2019 ◽  
Author(s):  
Xinye Chen ◽  
Abbi miller ◽  
Shengting Cao ◽  
Yu Gan ◽  
Jie Zhang ◽  
...  

<div>A micro- and nano-fluidic device stacked with magnetic beads is developed to efficiently trap, concentrate, and retrieve Escherichia coli (E. coli) from bacteria suspension</div><div>and pig plasma. The small voids between the magnetic beads are used to physically isolate the bacteria in the device. We use computational fluid dynamics (CFD), 3D</div><div>tomography technology, and machine learning to probe and explain the bead stacking in a small 3D space with various flow rates. A combination of beads with different sizes is utilized to achieve a high capture efficiency of ~86% with a flow rate of 50 μL/min. Leveraging the high deformability of this device, the E. coli sample is retrieved from the designated bacteria suspension by applying a higher flow rate, followed by rapid magnetic separation. This unique function is also utilized to concentrate E. coli from the original bacteria suspension. An on-chip concentration</div><div>factor of ~11× is achieved by inputting 1,300 μL of the E. coli sample and then concentrating it in 100 μL buffer.</div><div>Importantly, this multiplexed, miniaturized, inexpensive, and transparent device is easy to fabricate and operate, making it ideal for pathogen separation in both laboratory and pointof- care (POC) settings.</div>


2019 ◽  
Author(s):  
Xinye Chen ◽  
Abbi miller ◽  
Shengting Cao ◽  
Yu Gan ◽  
Jie Zhang ◽  
...  

<div>A micro- and nano-fluidic device stacked with magnetic beads is developed to efficiently trap, concentrate, and retrieve Escherichia coli (E. coli) from bacteria suspension</div><div>and pig plasma. The small voids between the magnetic beads are used to physically isolate the bacteria in the device. We use computational fluid dynamics (CFD), 3D</div><div>tomography technology, and machine learning to probe and explain the bead stacking in a small 3D space with various flow rates. A combination of beads with different sizes is utilized to achieve a high capture efficiency of ~86% with a flow rate of 50 μL/min. Leveraging the high deformability of this device, the E. coli sample is retrieved from the designated bacteria suspension by applying a higher flow rate, followed by rapid magnetic separation. This unique function is also utilized to concentrate E. coli from the original bacteria suspension. An on-chip concentration</div><div>factor of ~11× is achieved by inputting 1,300 μL of the E. coli sample and then concentrating it in 100 μL buffer.</div><div>Importantly, this multiplexed, miniaturized, inexpensive, and transparent device is easy to fabricate and operate, making it ideal for pathogen separation in both laboratory and pointof- care (POC) settings.</div>


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