Probing Intradomain and Interdomain Conformational Changes during Equilibrium Unfolding of Phosphoglycerate Kinase: Fluorescence and Circular Dichroism Study of Tryptophan Mutants

Biochemistry ◽  
1995 ◽  
Vol 34 (42) ◽  
pp. 13934-13942 ◽  
Author(s):  
Mark A. Sherman ◽  
Joseph M. Beechem ◽  
Maria T. Mas
Keyword(s):  
Circular Dichroism ◽  
Conformational Changes ◽  
Phosphoglycerate Kinase ◽  
Equilibrium Unfolding ◽  
Circular Dichroïsm

scholarly journals Conformational changes in the H3 . H4 histone complex. Serological and circular dichroism studies.

1980 ◽  
Vol 255 (15) ◽  
pp. 7059-7062
Author(s):  
L. Feldman ◽  
N.V. Beaudette ◽  
B.D. Stollar ◽  
G.D. Fasman
Keyword(s):  
Circular Dichroism ◽  
Conformational Changes ◽  
Circular Dichroïsm

scholarly journals Electronic Circular Dichroism of the Cas9 Protein and gRNA:Cas9 Ribonucleoprotein Complex

2021 ◽  
Vol 22 (6) ◽  
pp. 2937
Author(s):  
Monika Halat ◽  
Magdalena Klimek-Chodacka ◽  
Jagoda Orleanska ◽  
Malgorzata Baranska ◽  
Rafal Baranski
Keyword(s):  
Circular Dichroism ◽  
Conformational Changes ◽  
Structural Changes ◽  
Electronic Circular Dichroism ◽  
Guide Rna ◽  
Cas9 Protein ◽  
Rnp Complex ◽  
Characteristic Features ◽  
Circular Dichroïsm

The Streptococcus pyogenes Cas9 protein (SpCas9), a component of CRISPR-based immune system in microbes, has become commonly utilized for genome editing. This nuclease forms a ribonucleoprotein (RNP) complex with guide RNA (gRNA) which induces Cas9 structural changes and triggers its cleavage activity. Here, electronic circular dichroism (ECD) spectroscopy was used to confirm the RNP formation and to determine its individual components. The ECD spectra had characteristic features differentiating Cas9 and gRNA, the former showed a negative/positive profile with maxima located at 221, 209 and 196 nm, while the latter revealed positive/negative/positive/negative pattern with bands observed at 266, 242, 222 and 209 nm, respectively. For the first time, the experimental ECD spectrum of the gRNA:Cas9 RNP complex is presented. It exhibits a bisignate positive/negative ECD couplet with maxima at 273 and 235 nm, and it differs significantly from individual spectrum of each RNP components. Additionally, the Cas9 protein and RNP complex retained biological activity after ECD measurements and they were able to bind and cleave DNA in vitro. Hence, we conclude that ECD spectroscopy can be considered as a quick and non-destructive method of monitoring conformational changes of the Cas9 protein as a result of Cas9 and gRNA interaction, and identification of the gRNA:Cas9 RNP complex.

scholarly journals The effects of Ca2+ and Cd2+ on the secondary and tertiary structure of bovine testis calmodulin. A circular-dichroism study

1986 ◽  
Vol 238 (2) ◽  
pp. 485-490 ◽  
Author(s):  
S R Martin ◽  
P M Bayley
Keyword(s):  
Circular Dichroism ◽  
Conformational Changes ◽  
Metal Ion ◽  
Tertiary Structure ◽  
Thermal Unfolding ◽  
Apparent Effect ◽  
Thermally Induced ◽  
Circular Dichroïsm ◽  
Secondary And Tertiary Structure

Near-u.v. and far-u.v. c.d. spectra of bovine testis calmodulin and its tryptic fragments (TR1C, N-terminal half, residues 1-77, and TR2C, C-terminal half, residues 78-148) were recorded in metal-ion-free buffer and in the presence of saturating concentrations of Ca2+ or Cd2+ under a range of different solvent conditions. The results show the following: if there is any interaction between the N-terminal and C-terminal halves of calmodulin, it has not apparent effect on the secondary or tertiary structure of either half; the conformational changes induced by Ca2+ or Cd2+ are substantially greater in TR2C than they are in TR1C; the presence of Ca2+ or Cd2+ confers considerable stability with respect to urea-induced denaturation, both for the whole molecule and for either of the tryptic fragments; a thermally induced transition occurs in whole calmodulin at temperatures substantially below the temperature of major thermal unfolding, both in the presence and in the absence of added metal ion; the effects of Cd2+ are identical with those of Ca2+ under all conditions studied.

Circular dichroism studies of freeze-drying-induced conformational changes in human hemoglobin

Biopolymers ◽  
1983 ◽  
Vol 22 (11) ◽  
pp. 2367-2381 ◽  
Author(s):  
Christian Thirion ◽  
Dominique Larcher ◽  
Bernard Chaillot ◽  
Pierre Labrude ◽  
Claude Vigneron
Keyword(s):  
Circular Dichroism ◽  
Conformational Changes ◽  
Freeze Drying ◽  
Human Hemoglobin ◽  
Circular Dichroïsm

Circular Dichroism of C-Phycoerythrin: A Conformational Analysis

1980 ◽  
Vol 35 (5-6) ◽  
pp. 367-375 ◽  
Author(s):  
Elisabeth Langer ◽  
Harald Lehner ◽  
Wolfhart Rüdiger ◽  
Barbara Zickendraht-Wendelstadt
Keyword(s):  
Circular Dichroism ◽  
Secondary Structure ◽  
Conformational Changes ◽  
Spectral Region ◽  
Protein Unfolding ◽  
Extensive Study ◽  
Random Coil ◽  
Linear Superposition ◽  
Thermally Induced ◽  
Circular Dichroïsm

Abstract An extensive study of the chiroptical properties of C-phycoerythrin and the α-and β-subunits in the spectral region from 700 -200 nm is presented. Based on the VIS-circular dichroism inherently chiral conform ations are proposed for the co­ valently linked chromophores. By means of mean residue ellipticities and the experimental circular dichroism spectra in the region of the n → π* peptide transition the a-helix contents of the apoproteins of the ac-and ß-subunits are estimated to amount to 60% and 40%, respectively. The circular dichroism spectrum of native C-phycoerythrin is congruent with a linear superposition of the α-and β-subspectra, in the whole spectral region studied. Since a-and β-subunits are associated in native C-phycoery-thrin as revealed by sedim entation analysis the interactions between the subunits in the native chromoprotein are not accom panied by substantial conform ational changes. In the temperature range 0°-40°C the thermally induced changes of the chrom ophores in native C-phycoerythrin are not associated with changes of the secondary structure of the apoprotein. Unfolding occurs at 60°-70°C but slowly leads to irreversible denaturation. Protein unfolding starts at 3 M urea. The random coil secondary structure of the apoproteins is reached at 8 M urea. At this concentration the absorbance and the optical activity of the chrom o­ phores are reduced by a factor 3 and 10, respectively. The conformational changes in the peptide with increasing denaturant concentration are not synchronous with those induced in the Chromo­ phore indicating that a m ultistep process is operative during unfolding. The C D results on dena­ turation are supplem ented by absorption and em ission spectroscopy.

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