scholarly journals Residue-Specific Solvation-Directed Thermodynamic and Kinetic Control over Peptide Self-Assembly with 1D/2D Structure Selection

ACS Nano ◽  
2019 ◽  
Author(s):  
Yiyang Lin ◽  
Matthew Penna ◽  
Michael R. Thomas ◽  
Jonathan P. Wojciechowski ◽  
Vincent Leonardo ◽  
...  
Author(s):  
Sung Ho Jung ◽  
Masayuki Takeuchi ◽  
Kazunori Sugiyasu

ACS Nano ◽  
2020 ◽  
Vol 14 (5) ◽  
pp. 5491-5505 ◽  
Author(s):  
Michael A. VandenBerg ◽  
Jugal Kishore Sahoo ◽  
Lei Zou ◽  
William McCarthy ◽  
Matthew J. Webber

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Ali Asghar Hakami Zanjani ◽  
Nicholas P. Reynolds ◽  
Afang Zhang ◽  
Tanja Schilling ◽  
Raffaele Mezzenga ◽  
...  

Abstract By combining atomistic and higher-level modelling with solution X-ray diffraction we analyse self-assembly pathways for the IFQINS hexapeptide, a bio-relevant amyloid former derived from human lysozyme. We verify that (at least) two metastable polymorphic structures exist for this system which are substantially different at the atomistic scale, and compare the conditions under which they are kinetically accessible. We further examine the higher-level polymorphism for these systems at the nanometre to micrometre scales, which is manifested in kinetic differences and in shape differences between structures instead of or as well as differences in the small-scale contact topology. Any future design of structure based inhibitors of the IFQINS steric zipper, or of close homologues such as TFQINS which are likely to have similar structures, should take account of this polymorphic assembly.


2019 ◽  
Vol 141 (50) ◽  
pp. 19669-19676 ◽  
Author(s):  
Tomoki Tateishi ◽  
Satoshi Takahashi ◽  
Atsushi Okazawa ◽  
Vicente Martí-Centelles ◽  
Jianzhu Wang ◽  
...  

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Kuhan Chandru ◽  
Tony Z. Jia ◽  
Irena Mamajanov ◽  
Niraja Bapat ◽  
H. James Cleaves

Abstract Prebiotic chemists often study how modern biopolymers, e.g., peptides and nucleic acids, could have originated in the primitive environment, though most contemporary biomonomers don’t spontaneously oligomerize under mild conditions without activation or catalysis. However, life may not have originated using the same monomeric components that it does presently. There may be numerous non-biological (or “xenobiological”) monomer types that were prebiotically abundant and capable of facile oligomerization and self-assembly. Many modern biopolymers degrade abiotically preferentially via processes which produce thermodynamically stable ring structures, e.g. diketopiperazines in the case of proteins and 2′, 3′-cyclic nucleotide monophosphates in the case of RNA. This weakness is overcome in modern biological systems by kinetic control, but this need not have been the case for primitive systems. We explored here the oligomerization of a structurally diverse set of prebiotically plausible xenobiological monomers, which can hydrolytically interconvert between cyclic and acyclic forms, alone or in the presence of glycine under moderate temperature drying conditions. These monomers included various lactones, lactams and a thiolactone, which varied markedly in their stability, propensity to oligomerize and apparent modes of initiation, and the oligomeric products of some of these formed self-organized microscopic structures which may be relevant to protocell formation.


ACS Nano ◽  
2020 ◽  
Vol 14 (4) ◽  
pp. 4595-4600 ◽  
Author(s):  
Joon Suk Oh ◽  
Gi-Ra Yi ◽  
David J. Pine

ACS Nano ◽  
2008 ◽  
Vol 2 (4) ◽  
pp. 651-660 ◽  
Author(s):  
Sigrid Weigelt ◽  
Christian Bombis ◽  
Carsten Busse ◽  
Martin M. Knudsen ◽  
Kurt V. Gothelf ◽  
...  

2021 ◽  
Author(s):  
Alisha J. Lewis ◽  
Mathew M. Maye

In this paper, we describe the use of weakly interacting DNA linkages to assemble nanoparticles into defined clusters. Gold nanoparticles (AuNPs) were synthesized and functionalized with thiol modified single-stranded DNA (ssDNA) and hybridized with ssDNA linkers of a defined length (L). The self-assembly kinetics were altered by manipulating interparticle energetics through changes to linker length, rigidity, and sequence. The linker length regulated the hybridization energy between complementary AuNPs, were longer L increased adhesion, resulting in classical uncontrollable aggregation. In contrast, L of six complementary bases decreased adhesion and resulting in slower nucleation that promoted small cluster formation, the growth of which was studied at two assembly temperatures. Results indicated that a decrease in temperature to 15 oC increased cluster yield with L6 as compared to 25 oC. Finally, the clusters were separated from unassembled AuNPs by sucrose gradient ultracentrifugation (UC) and studied via UV-visible spectrophotometry (UV-vis), dynamic light scattering (DLS) and transmission electron microscopy (TEM).


2019 ◽  
Vol 58 (39) ◽  
pp. 13799-13802 ◽  
Author(s):  
Axel‐Laurenz Buckinx ◽  
Kirsten Verstraete ◽  
Evelien Baeten ◽  
Rico F. Tabor ◽  
Anna Sokolova ◽  
...  

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