Structure-Based Model of RNA Pseudoknot Captures Magnesium-Dependent Folding Thermodynamics

Ana Mandic; Ryan L. Hayes; Heiko Lammert; Ryan R. Cheng; José N. Onuchic

doi:10.1021/acs.jpcb.8b10791

Structure-Based Model of RNA Pseudoknot Captures Magnesium-Dependent Folding Thermodynamics

The Journal of Physical Chemistry B ◽

10.1021/acs.jpcb.8b10791 ◽

2019 ◽

Vol 123 (7) ◽

pp. 1505-1511 ◽

Cited By ~ 2

Author(s):

Ana Mandic ◽

Ryan L. Hayes ◽

Heiko Lammert ◽

Ryan R. Cheng ◽

José N. Onuchic

Keyword(s):

Rna Pseudoknot ◽

Folding Thermodynamics

Download Full-text

Predicting RNA pseudoknot folding thermodynamics

Nucleic Acids Research ◽

10.1093/nar/gkl346 ◽

2006 ◽

Vol 34 (9) ◽

pp. 2634-2652 ◽

Cited By ~ 89

Author(s):

S. Cao ◽

S.-J. Chen

Keyword(s):

Rna Pseudoknot ◽

Folding Thermodynamics

Download Full-text

Faculty Opinions recommendation of The GAAA tetraloop-receptor interaction contributes differentially to folding thermodynamics and kinetics for the P4-P6 RNA domain.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1009837.136558 ◽

2002 ◽

Author(s):

Samuel Butcher

Keyword(s):

Receptor Interaction ◽

Thermodynamics And Kinetics ◽

Folding Thermodynamics

Download Full-text

Faculty Opinions recommendation of Single-molecule fluorescence resonance energy transfer studies of the human telomerase RNA pseudoknot: temperature-/urea-dependent folding kinetics and thermodynamics.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718309391.793511236 ◽

2015 ◽

Author(s):

Lea Harrington

Keyword(s):

Energy Transfer ◽

Fluorescence Resonance Energy Transfer ◽

Single Molecule ◽

Resonance Energy Transfer ◽

Resonance Energy ◽

Folding Kinetics ◽

Single Molecule Fluorescence ◽

Kinetics And Thermodynamics ◽

Human Telomerase ◽

Rna Pseudoknot

Download Full-text

Faculty Opinions recommendation of Single-molecule FRET reveals the folding dynamics of the human telomerase RNA pseudoknot domain.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.724844428.793511237 ◽

2015 ◽

Author(s):

Lea Harrington

Keyword(s):

Single Molecule ◽

Telomerase Rna ◽

Single Molecule Fret ◽

Folding Dynamics ◽

Human Telomerase ◽

Rna Pseudoknot

Download Full-text

Analysis of folded structure and folding thermodynamics in heterogeneous-backbone proteomimetics

10.1016/bs.mie.2021.04.009 ◽

2021 ◽

Author(s):

Jacqueline R. Santhouse ◽

Shilpa R. Rao ◽

W. Seth Horne

Keyword(s):

Folded Structure ◽

Folding Thermodynamics

Download Full-text

The GAAA Tetraloop−Receptor Interaction Contributes Differentially to Folding Thermodynamics and Kinetics for the P4−P6 RNA Domain†

Biochemistry ◽

10.1021/bi0264869 ◽

2002 ◽

Vol 41 (41) ◽

pp. 12271-12276 ◽

Cited By ~ 31

Author(s):

Brian T. Young ◽

Scott K. Silverman

Keyword(s):

Receptor Interaction ◽

Thermodynamics And Kinetics ◽

Folding Thermodynamics

Download Full-text

Single-Molecule FRET Reveals the Folding Dynamics of the Human Telomerase RNA Pseudoknot Domain

Angewandte Chemie International Edition ◽

10.1002/anie.201200526 ◽

2012 ◽

Vol 51 (24) ◽

pp. 5876-5879 ◽

Cited By ~ 45

Author(s):

Martin Hengesbach ◽

Nak-Kyoon Kim ◽

Juli Feigon ◽

Michael D. Stone

Keyword(s):

Single Molecule ◽

Telomerase Rna ◽

Single Molecule Fret ◽

Folding Dynamics ◽

Human Telomerase ◽

Rna Pseudoknot

Download Full-text

RNA pseudoknot prediction via an evolutionary algorithm

2009 IEEE Congress on Evolutionary Computation ◽

10.1109/cec.2009.4982958 ◽

2009 ◽

Author(s):

Kay C. Wiese ◽

Andrew G. Hendriks

Keyword(s):

Evolutionary Algorithm ◽

Rna Pseudoknot

Download Full-text

Grow and Graft a Better CUDA pknotsRG for RNA Pseudoknot Free Energy Calculation

Proceedings of the Companion Publication of the 2015 on Genetic and Evolutionary Computation Conference - GECCO Companion '15 ◽

10.1145/2739482.2768418 ◽

2015 ◽

Cited By ~ 16

Author(s):

William B. Langdon ◽

Mark Harman

Keyword(s):

Free Energy ◽

Free Energy Calculation ◽

Energy Calculation ◽

Rna Pseudoknot

Download Full-text

Contribution of Hydration to Protein Folding Thermodynamics

Journal of Molecular Biology ◽

10.1006/jmbi.1993.1417 ◽

1993 ◽

Vol 232 (2) ◽

pp. 660-679 ◽

Cited By ~ 277

Author(s):

Peter L. Privalov ◽

George I. Makhatadze

Keyword(s):

Protein Folding ◽

Folding Thermodynamics

Download Full-text