Optimizing Protein–Polymer Interactions in a Poly(ethylene glycol) Coarse-Grained Model

2018 ◽  
Vol 122 (33) ◽  
pp. 7997-8005 ◽  
Author(s):  
Farhad Ramezanghorbani ◽  
Ping Lin ◽  
Coray M. Colina
Soft Matter ◽  
2021 ◽  
Author(s):  
Nicholas Liesen ◽  
Meng Wang ◽  
Mehrnoosh Taghavimehr ◽  
Jae Sang Lee ◽  
Reza Montazami ◽  
...  

A series of segmented ammonium ionenes with varying weight fractions of 2,000 g/mol poly(ethylene glycol) (PEG) or poly(tetramethylene oxide) (PTMO) soft segments were synthesized, and a simplified coarse-grained model of...


2012 ◽  
Vol 1418 ◽  
Author(s):  
Seyed Sina Moeinzadeh ◽  
Esmaiel Jabbari

ABSTRACTIn this work the microstructures of star acrylated poly(ethylene glycol-co-lactide) (SPELA) with different LA:EG ratios in the aqueous solution have been simulated via Dissipative Particle Dynamics (DPD) approach at the mesoscale. The system components were coarse-grained into different beads (set of atoms) which moved according to the Newton’s equations of motion integrated via a modified Velocity-Verlet algorithm. The force acting on each bead, in a specific cutoff distance (rc), was divided into a conservative force (FC), random force (FR), dissipative force (FD), bond force (FS) and bond angle force (FE). The repulsion parameters of the conservative force (αij) were calculated from the solubility parameter of the beads, each of which were extracted from an atomistic molecular dynamics simulation (MD). Simulations showed the formation of micelles with lactide and acrylate beads occupied the core and hydrophilic ethylene oxide segments extending through the water to form the corona. The micelles showed an increasing trend in size and decreasing trend in number density with increase in LA:EG ratio. Results showed that the acrylate density decreased from the center of the micelles to the core surface although the overall amount of acrylates increased due to the increase in volume. Furthermore, the running integration number of acrylate-water beads showed decreasing accessibility of acrylates to water with increasing PLA volume fraction.


2020 ◽  
Vol 11 (2) ◽  
pp. 275-280 ◽  
Author(s):  
Imke A. B. Pijpers ◽  
Fenghua Meng ◽  
Jan C. M. van Hest ◽  
Loai K. E. A. Abdelmohsen

Different ratios between THF and dioxane were used to study the effect of organic solvent composition on the self-assembly and subsequent shape-change of poly(ethylene glycol)-b-poly(d,l-lactide) (PEG-PDLLA) polymersomes.


Langmuir ◽  
2010 ◽  
Vol 26 (20) ◽  
pp. 15814-15823 ◽  
Author(s):  
Stefano Elli ◽  
Lidia Eusebio ◽  
Paolo Gronchi ◽  
Fabio Ganazzoli ◽  
Marco Goisis

2019 ◽  
Vol 10 (10) ◽  
Author(s):  
Anton Bonartsev ◽  
Vera Voinova ◽  
Elizaveta Akoulina ◽  
Andrey Dudun ◽  
Irina Zharkova ◽  
...  

2007 ◽  
Vol 32 (5) ◽  
pp. 431-446 ◽  
Author(s):  
Tahar Bartil ◽  
Mahmoud Bounekhel ◽  
Cedric Calberg ◽  
Robert Jerome

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