Study of a DNA Duplex by Nuclear Magnetic Resonance and Molecular Dynamics Simulations. Validation of Pulsed Dipolar Electron Paramagnetic Resonance Distance Measurements Using Triarylmethyl-Based Spin Labels

Alexander A. Lomzov; Eugeniy A. Sviridov; Andrey V. Shernuykov; Georgiy Yu. Shevelev; Dmitrii V. Pyshnyi; Elena G. Bagryanskaya

doi:10.1021/acs.jpcb.6b03193

Study of a DNA Duplex by Nuclear Magnetic Resonance and Molecular Dynamics Simulations. Validation of Pulsed Dipolar Electron Paramagnetic Resonance Distance Measurements Using Triarylmethyl-Based Spin Labels

The Journal of Physical Chemistry B ◽

10.1021/acs.jpcb.6b03193 ◽

2016 ◽

Vol 120 (23) ◽

pp. 5125-5133 ◽

Cited By ~ 8

Author(s):

Alexander A. Lomzov ◽

Eugeniy A. Sviridov ◽

Andrey V. Shernuykov ◽

Georgiy Yu. Shevelev ◽

Dmitrii V. Pyshnyi ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Electron Paramagnetic Resonance ◽

Magnetic Resonance ◽

Molecular Dynamics Simulations ◽

Spin Labels ◽

Distance Measurements ◽

Paramagnetic Resonance ◽

Dynamics Simulations ◽

Electron Paramagnetic

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Electron Paramagnetic Resonance Measurements of Four Nitroxide Probes in Supercooled Water Explained by Molecular Dynamics Simulations

The Journal of Physical Chemistry B ◽

10.1021/acs.jpcb.0c00684 ◽

2020 ◽

Vol 124 (19) ◽

pp. 3962-3972

Author(s):

Patrick J. McMillin ◽

Matthew Alegrete ◽

Miroslav Peric ◽

Tyler Luchko

Keyword(s):

Molecular Dynamics ◽

Electron Paramagnetic Resonance ◽

Molecular Dynamics Simulations ◽

Supercooled Water ◽

Paramagnetic Resonance ◽

Dynamics Simulations ◽

Electron Paramagnetic

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Characterizing the conformational dynamics of metal-free PsaA using molecular dynamics simulations and electron paramagnetic resonance spectroscopy

Biophysical Chemistry ◽

10.1016/j.bpc.2015.08.004 ◽

2015 ◽

Vol 207 ◽

pp. 51-60 ◽

Cited By ~ 6

Author(s):

Evelyne Deplazes ◽

Stephanie L. Begg ◽

Jessica H. van Wonderen ◽

Rebecca Campbell ◽

Bostjan Kobe ◽

...

Keyword(s):

Molecular Dynamics ◽

Electron Paramagnetic Resonance ◽

Molecular Dynamics Simulations ◽

Electron Paramagnetic Resonance Spectroscopy ◽

Conformational Dynamics ◽

Resonance Spectroscopy ◽

Paramagnetic Resonance ◽

Metal Free ◽

Dynamics Simulations ◽

Electron Paramagnetic

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A variable temperature solid-state nuclear magnetic resonance, electron paramagnetic resonance and Raman scattering study of molecular dynamics in ferroelectric fluorides

Journal of Physics Condensed Matter ◽

10.1088/0953-8984/23/31/315402 ◽

2011 ◽

Vol 23 (31) ◽

pp. 315402 ◽

Cited By ~ 3

Author(s):

Radoslaw M Kowalczyk ◽

Thomas F Kemp ◽

David Walker ◽

Kevin J Pike ◽

Pamela A Thomas ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Electron Paramagnetic Resonance ◽

Solid State ◽

Magnetic Resonance ◽

Variable Temperature ◽

Paramagnetic Resonance ◽

Scattering Study ◽

Electron Paramagnetic ◽

Resonance Electron

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Simulation of Nitroxide Electron Paramagnetic Resonance Spectra from Brownian Trajectories and Molecular Dynamics Simulations

Biophysical Journal ◽

10.1529/biophysj.107.125419 ◽

2008 ◽

Vol 94 (10) ◽

pp. 3798-3809 ◽

Cited By ~ 40

Author(s):

Susan C. DeSensi ◽

David P. Rangel ◽

Albert H. Beth ◽

Terry P. Lybrand ◽

Eric J. Hustedt

Keyword(s):

Molecular Dynamics ◽

Electron Paramagnetic Resonance ◽

Molecular Dynamics Simulations ◽

Paramagnetic Resonance ◽

Dynamics Simulations ◽

Electron Paramagnetic

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Spin-labeled photosynthetic reaction centers fromRhodobacter sphaeroides studied by electron paramagnetic resonance spectroscopy and molecular dynamics simulations

Applied Magnetic Resonance ◽

10.1007/bf03166254 ◽

2007 ◽

Vol 31 (1-2) ◽

pp. 167-178 ◽

Cited By ~ 13

Author(s):

P. Gajula ◽

I. V. Borovykh ◽

C. Beier ◽

T. Shkuropatova ◽

P. Gast ◽

...

Keyword(s):

Molecular Dynamics ◽

Electron Paramagnetic Resonance ◽

Molecular Dynamics Simulations ◽

Electron Paramagnetic Resonance Spectroscopy ◽

Reaction Centers ◽

Resonance Spectroscopy ◽

Photosynthetic Reaction Centers ◽

Paramagnetic Resonance ◽

Dynamics Simulations ◽

Electron Paramagnetic

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Conformational Analysis of Heparin-Analogue Pentasaccharides by Nuclear Magnetic Resonance Spectroscopy and Molecular Dynamics Simulations

Journal of Chemical Information and Modeling ◽

10.1021/acs.jcim.1c00200 ◽

2021 ◽

Author(s):

Gábor Balogh ◽

Tamás Gyöngyösi ◽

István Timári ◽

Mihály Herczeg ◽

Anikó Borbás ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Magnetic Resonance Spectroscopy ◽

Conformational Analysis ◽

Molecular Dynamics Simulations ◽

Nuclear Magnetic Resonance Spectroscopy ◽

Resonance Spectroscopy ◽

Dynamics Simulations ◽

Nuclear Magnetic

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ChemInform Abstract: EXPERIMENTAL EVIDENCE FOR TRAPPED VALENCES IN THE MIXED-VALENCE COMPLEX μ-PYRAZINE-BIS(PENTAAMMINERUTHENIUM) TOSYLATE. ELECTRON PARAMAGNETIC RESONANCE, MAGNETIC SUSCEPTIBILITY, AND NUCLEAR MAGNETIC RESONANCE RESULTS

Chemischer Informationsdienst ◽

10.1002/chin.197838290 ◽

1978 ◽

Vol 9 (38) ◽

Author(s):

B. C. BUNKER ◽

R. S. DRAGO ◽

D. N. HENDRICKSON ◽

R. M. RICHMAN ◽

S. L. KESSELL

Keyword(s):

Nuclear Magnetic Resonance ◽

Electron Paramagnetic Resonance ◽

Magnetic Susceptibility ◽

Magnetic Resonance ◽

Experimental Evidence ◽

Mixed Valence ◽

Paramagnetic Resonance ◽

Electron Paramagnetic ◽

Mixed Valence Complex ◽

Nuclear Magnetic

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Molecular Recognition of the Thomsen-Friedenreich Antigen–Threonine Conjugate by Adhesion/Growth Regulatory Galectin-3: Nuclear Magnetic Resonance Studies and Molecular Dynamics Simulations

Biochemistry ◽

10.1021/bi300761s ◽

2012 ◽

Vol 51 (37) ◽

pp. 7278-7289 ◽

Cited By ~ 25

Author(s):

Austin B. Yongye ◽

Luis Calle ◽

Ana Ardá ◽

Jesús Jiménez-Barbero ◽

Sabine André ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Molecular Recognition ◽

Molecular Dynamics Simulations ◽

Magnetic Resonance Studies ◽

Galectin 3 ◽

Dynamics Simulations ◽

Nuclear Magnetic

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Mitochondria‐targeted antioxidant promotes recovery of skeletal muscle mitochondrial function after burn trauma assessed by in vivo 31 P nuclear magnetic resonance and electron paramagnetic resonance spectroscopy

The FASEB Journal ◽

10.1096/fj.12-220764 ◽

2013 ◽

Vol 27 (6) ◽

pp. 2521-2530 ◽

Cited By ~ 16

Author(s):

Valeria Righi ◽

Caterina Constantinou ◽

Dionyssios Mintzopoulos ◽

Nadeem Khan ◽

S. P. Mupparaju ◽

...

Keyword(s):

Skeletal Muscle ◽

Nuclear Magnetic Resonance ◽

Electron Paramagnetic Resonance ◽

Magnetic Resonance ◽

Mitochondrial Function ◽

Electron Paramagnetic Resonance Spectroscopy ◽

Resonance Spectroscopy ◽

Paramagnetic Resonance ◽

Electron Paramagnetic

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Dynamic aspects of antibody:oligosaccharide complexes characterized by molecular dynamics simulations and saturation transfer difference nuclear magnetic resonance

Glycobiology ◽

10.1093/glycob/cwr059 ◽

2011 ◽

Vol 21 (12) ◽

pp. 1570-1579 ◽

Cited By ~ 13

Author(s):

François-Xavier Theillet ◽

Martin Frank ◽

Brigitte Vulliez-Le Normand ◽

Catherine Simenel ◽

Sylviane Hoos ◽

...

Keyword(s):

Molecular Dynamics ◽

Nuclear Magnetic Resonance ◽

Magnetic Resonance ◽

Molecular Dynamics Simulations ◽

Saturation Transfer ◽

Saturation Transfer Difference ◽

Dynamics Simulations ◽

Nuclear Magnetic

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