Conformational Strain Indicated by Ramachandran Angles for the Protein Backbone Is Only Weakly Related to the Flexibility

Ashraya Ravikumar; Alexandre G. de Brevern; Narayanaswamy Srinivasan

doi:10.1021/acs.jpcb.1c00168

Conformational Strain Indicated by Ramachandran Angles for the Protein Backbone Is Only Weakly Related to the Flexibility

The Journal of Physical Chemistry B ◽

10.1021/acs.jpcb.1c00168 ◽

2021 ◽

Vol 125 (10) ◽

pp. 2597-2606

Author(s):

Ashraya Ravikumar ◽

Alexandre G. de Brevern ◽

Narayanaswamy Srinivasan

Keyword(s):

Protein Backbone

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Faculty Opinions recommendation of Local dynamic amplitudes on the protein backbone from dipolar couplings: toward the elucidation of slower motions in biomolecules.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1019805.225432 ◽

2004 ◽

Author(s):

Antonio Rosato

Keyword(s):

Dipolar Couplings ◽

Local Dynamic ◽

Protein Backbone

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Toward quantification of protein backbone-backbone hydrogen bonding energies: An energetic analysis of an amide-to-ester mutation in an α-helix within a protein

Protein Science ◽

10.1110/ps.083439708 ◽

2008 ◽

Vol 17 (6) ◽

pp. 1096-1101 ◽

Cited By ~ 36

Author(s):

Jianmin Gao ◽

Jeffery W. Kelly

Keyword(s):

Hydrogen Bonding ◽

Protein Backbone ◽

Energetic Analysis ◽

Α Helix

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On the relationship between NMR-derived amide order parameters and protein backbone entropy changes

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.24789 ◽

2015 ◽

Vol 83 (5) ◽

pp. 922-930 ◽

Cited By ~ 39

Author(s):

Kim A. Sharp ◽

Evan O'Brien ◽

Vignesh Kasinath ◽

A. Joshua Wand

Keyword(s):

Order Parameters ◽

Protein Backbone ◽

Entropy Changes ◽

The Relationship

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Temperature Dependence of the Amide I Frequency as a Probe of Solvent Accessibility of the Protein Backbone

Biophysical Journal ◽

10.1016/j.bpj.2009.12.3447 ◽

2010 ◽

Vol 98 (3) ◽

pp. 629a-630a ◽

Cited By ~ 1

Author(s):

Dana M. Alessi ◽

Sean M. Decatur

Keyword(s):

Temperature Dependence ◽

Solvent Accessibility ◽

Protein Backbone

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ANGLOR: A Composite Machine-Learning Algorithm for Protein Backbone Torsion Angle Prediction

PLoS ONE ◽

10.1371/journal.pone.0003400 ◽

2008 ◽

Vol 3 (10) ◽

pp. e3400 ◽

Cited By ~ 45

Author(s):

Sitao Wu ◽

Yang Zhang

Keyword(s):

Machine Learning ◽

Torsion Angle ◽

Learning Algorithm ◽

Machine Learning Algorithm ◽

Protein Backbone ◽

Backbone Torsion Angle

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Construction of Protein Backbone Fragments Libraries on Large Protein Sets Using a Randomized Spectral Clustering Algorithm

Bioinformatics Research and Applications - Lecture Notes in Computer Science ◽

10.1007/978-3-319-59575-7_10 ◽

2017 ◽

pp. 108-119 ◽

Cited By ~ 2

Author(s):

Wessam Elhefnawy ◽

Min Li ◽

Jianxin Wang ◽

Yaohang Li

Keyword(s):

Spectral Clustering ◽

Clustering Algorithm ◽

Protein Backbone ◽

Large Protein ◽

Spectral Clustering Algorithm

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Protein backbone motions viewed by intraresidue and sequential HN–Hα residual dipolar couplings

Journal of Biomolecular NMR ◽

10.1007/s10858-008-9237-3 ◽

2008 ◽

Vol 41 (1) ◽

pp. 17-28 ◽

Cited By ~ 25

Author(s):

Beat Vögeli ◽

Lishan Yao ◽

Ad Bax

Keyword(s):

Residual Dipolar Couplings ◽

Dipolar Couplings ◽

Protein Backbone

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pH dependence of conformational fluctuations of the protein backbone

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.24673 ◽

2014 ◽

Vol 82 (11) ◽

pp. 3132-3143 ◽

Cited By ~ 10

Author(s):

Daniel E. Richman ◽

Ananya Majumdar ◽

Bertrand García-Moreno E

Keyword(s):

Ph Dependence ◽

Protein Backbone

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A Method of Construction of Protein Backbone Models

Review of Scientific Instruments ◽

10.1063/1.1686405 ◽

1973 ◽

Vol 44 (9) ◽

pp. 1414-1415

Author(s):

William E. Keefe ◽

Donna‐Beth Howe

Keyword(s):

Protein Backbone

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Protein Backbone Torsion Angle-Based Structure Comparison and Secondary Structure Database Web Server

Genomics & Informatics ◽

10.5808/gi.2013.11.3.155 ◽

2013 ◽

Vol 11 (3) ◽

pp. 155 ◽

Cited By ~ 1

Author(s):

Sunghoon Jung ◽

Se-Eun Bae ◽

Insung Ahn ◽

Hyeon S. Son

Keyword(s):

Secondary Structure ◽

Torsion Angle ◽

Web Server ◽

Protein Backbone ◽

Structure Comparison ◽

Structure Database ◽

Backbone Torsion Angle

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