Investigations of Stacked DNA Base-Pair Steps: Highly Accurate Stacking Interaction Energies, Energy Decomposition, and Many-Body Stacking Effects

2018 ◽  
Vol 15 (1) ◽  
pp. 95-115 ◽  
Author(s):  
Holger Kruse ◽  
Pavel Banáš ◽  
Jiřı́ Šponer
Keyword(s):  
Base Pair ◽  
Interaction Energies ◽  
Energy Decomposition ◽  
Many Body ◽  
Stacking Interaction ◽  
Dna Base ◽  
Dna Base Pair

Varying DNA Base-Pair Size in Subangstrom Increments:  Evidence for a Loose, Not Large, Active Site in Low-Fidelity Dpo4 Polymerase

Biochemistry ◽  
2006 ◽  
Vol 45 (9) ◽  
pp. 2772-2778 ◽  
Author(s):  
Shin Mizukami ◽  
Tae Woo Kim ◽  
Sandra A. Helquist ◽  
Eric T. Kool
Keyword(s):  
Active Site ◽  
Base Pair ◽  
Dna Base ◽  
Dna Base Pair

scholarly journals A rhodium(III) complex for high-affinity DNA base-pair mismatch recognition

2003 ◽  
Vol 100 (7) ◽  
pp. 3737-3742 ◽  
Author(s):  
H. Junicke ◽  
J. R. Hart ◽  
J. Kisko ◽  
O. Glebov ◽  
I. R. Kirsch ◽  
...  
Keyword(s):  
Base Pair ◽  
High Affinity ◽  
Base Pair Mismatch ◽  
Dna Base ◽  
Mismatch Recognition ◽  
Dna Base Pair

Interaction between the Guanine−Cytosine Watson−Crick DNA Base Pair and Hydrated Group IIa (Mg2+, Ca2+, Sr2+, Ba2+) and Group IIb (Zn2+, Cd2+, Hg2+) Metal Cations

1998 ◽  
Vol 102 (29) ◽  
pp. 5951-5957 ◽  
Author(s):  
Jiří Šponer ◽  
Jaroslav V. Burda ◽  
Michal Sabat ◽  
Jerzy Leszczynski ◽  
Pavel Hobza
Keyword(s):  
Base Pair ◽  
Metal Cations ◽  
Dna Base ◽  
Dna Base Pair

DNA Base Pair Stacking Crystallization of Gold Colloids

Langmuir ◽  
2020 ◽  
Vol 36 (19) ◽  
pp. 5118-5125 ◽  
Author(s):  
Jaewon Lee ◽  
Ji-Hyeok Huh ◽  
Seungwoo Lee
Keyword(s):  
Base Pair ◽  
Gold Colloids ◽  
Dna Base ◽  
Dna Base Pair ◽  
Base Pair Stacking

scholarly journals Isosteric and fluorescent DNA base pair formed by 4-amino-phthalimide and 2,4-diaminopyrimidine: melting, structure, and THz polar solvation dynamics

2016 ◽  
Vol 18 (9) ◽  
pp. 6813-6820 ◽  
Author(s):  
L. Dehmel ◽  
F. Berndt ◽  
M. Weinberger ◽  
M. Sajadi ◽  
I. Ioffe ◽  
...  
Keyword(s):  
Base Pair ◽  
Solvation Dynamics ◽  
Duplex Dna ◽  
Dna Base ◽  
Dna Base Pair ◽  
Polar Solvation

An artificial base pair in duplex DNA, formed by 2,4-diaminopyrimidine and fluorescent 4-aminophthalimide C-nucleosides, is characterized spectroscopically, for use in femtosecond solvation dynamics.

140 Attacking mechanism of H and OH radicals to DNA base pair: DFT calculations in water

2015 ◽  
Vol 33 (sup1) ◽  
pp. 91-92
Author(s):  
Naoko Okutsu ◽  
Eisuke Shimizu ◽  
Victor I. Danilov ◽  
Sergiy Shulga ◽  
Noriyuki Kurita
Keyword(s):  
Dft Calculations ◽  
Base Pair ◽  
Oh Radicals ◽  
Dna Base ◽  
Dna Base Pair

A single mode of DNA base-pair opening drives imino proton exchange

Nature ◽  
1987 ◽  
Vol 328 (6125) ◽  
pp. 89-92 ◽  
Author(s):  
Maurice Guéron ◽  
Michel Kochoyan ◽  
Jean-Louis Leroy
Keyword(s):  
Base Pair ◽  
Single Mode ◽  
Proton Exchange ◽  
Imino Proton ◽  
Dna Base ◽  
Imino Proton Exchange ◽  
Dna Base Pair ◽  
Base Pair Opening

Repair of DNA Base-pair Mismatches in Extracts of Escherichia coli

1984 ◽  
Vol 49 (0) ◽  
pp. 589-596 ◽  
Author(s):  
A.-L. Lu ◽  
K. Welsh ◽  
S. Clark ◽  
S.-S. Su ◽  
P. Modrich
Keyword(s):  
Escherichia Coli ◽  
Base Pair ◽  
Dna Base ◽  
Dna Base Pair
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