scholarly journals CG2AT2: an Enhanced Fragment-Based Approach for Serial Multi-scale Molecular Dynamics Simulations

2021 ◽  
Vol 17 (10) ◽  
pp. 6472-6482
Author(s):  
Owen N. Vickery ◽  
Phillip J. Stansfeld
Keyword(s):  
Molecular Dynamics ◽  
Molecular Dynamics Simulations ◽  
Multi Scale ◽  
Dynamics Simulations

Multi-scale theoretical investigation of molecular hydrogen adsorption over graphene: coronene as a case study

RSC Advances ◽  
2014 ◽  
Vol 4 (97) ◽  
pp. 54447-54453 ◽  
Author(s):  
Md Bin Yeamin ◽  
N. Faginas-Lago ◽  
M. Albertí ◽  
I. G. Cuesta ◽  
J. Sánchez-Marín ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Dft Calculations ◽  
Modeling And Simulation ◽  
Molecular Dynamics Simulations ◽  
Multiscale Modeling ◽  
Molecular Hydrogen ◽  
Hydrogen Adsorption ◽  
Multi Scale ◽  
Dynamics Simulations

Multiscale modeling and simulation (MMS) combining B97-D/TZV2P DFT calculations and molecular dynamics simulations are performed to investigate the adsorption of hydrogen over coronene as a model of graphene.

scholarly journals Elucidating the T Cell Receptor Transmembrane Organization via Multi-Scale Molecular Dynamics Simulations

2015 ◽  
Vol 108 (2) ◽  
pp. 558a-559a
Author(s):  
Antreas C. Kalli ◽  
Andre Cohnen ◽  
Oreste Acuto ◽  
Mark S.P. Sansom
Keyword(s):  
Molecular Dynamics ◽  
T Cell ◽  
Molecular Dynamics Simulations ◽  
T Cell Receptor ◽  
Cell Receptor ◽  
Multi Scale ◽  
Dynamics Simulations

scholarly journals Molecular-Dynamics Simulations of the Emergence of Surface Roughness in a Polymer under Compression

Materials ◽  
2021 ◽  
Vol 14 (23) ◽  
pp. 7327
Author(s):  
Robin Vacher ◽  
Astrid S. de Wijn
Keyword(s):  
Molecular Dynamics ◽  
Surface Roughness ◽  
Plastic Deformation ◽  
Polyvinyl Alcohol ◽  
Molecular Dynamics Simulations ◽  
Complex Materials ◽  
Multi Scale ◽  
Dynamics Simulations ◽  
Scale Roughness ◽  
Mechanisms Of Plasticity

Roughness of surfaces is both surprisingly ubiquitous on all length scales and extremely relevant practically. The appearance of multi-scale roughness has been linked to avalanches and plastic deformation in metals. However, other, more-complex materials have mechanisms of plasticity that are significantly different from those of metals. We investigated the emergence of roughness in a polymer under compression. We performed molecular-dynamics simulations of a slab of solid polyvinyl alcohol that was compressed bi-axially, and we characterised the evolution of the surface roughness. We found significantly different behaviour than what was previously observed in similar simulations of metals. We investigated the differences and argue that the visco-elasticity of the material plays a crucial role.

scholarly journals A Multi-Scale Approach to Molecular Dynamics Simulations of Shock Waves

2005 ◽  
pp. 297-326 ◽  
Author(s):  
Evan J. Reed ◽  
Laurence E. Fried ◽  
M. Riad Manaa ◽  
J.D. Joannopoulos
Keyword(s):  
Molecular Dynamics ◽  
Shock Waves ◽  
Molecular Dynamics Simulations ◽  
Multi Scale ◽  
Dynamics Simulations
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