scholarly journals Ab Initio Calculations of Free Energy of Activation at Multiple Electronic Structure Levels Made Affordable: An Effective Combination of Perturbation Theory and Machine Learning

2020 ◽  
Vol 16 (10) ◽  
pp. 6049-6060
Author(s):  
Tomáš Bučko ◽  
Monika Gešvandtnerová ◽  
Dario Rocca
2020 ◽  
Author(s):  
Tomas Bucko ◽  
Monika Gešvandtnerová ◽  
Dario Rocca

<div>While free energies are fundamental thermodynamic quantities to characterize chemical reactions, their calculation based on ab initio theory is usually limited by the high computational cost. This is particularly true if multiple levels of theory have to be tested to establish their relative accuracy, if highly expensive quantum mechanical approximations are of interest, and also if several different temperatures have to be considered. We present an ab initio approach that effectively couples perturbation theory and machine learning to make ab initio free energy calculations more affordable. Starting from results based on a certain production ab initio theory, perturbation theory is applied to obtain free energies. The large number of single point calculations required by a brute force application of this approach are here significantly decreased by applying machine learning techniques. Importantly, the training of the machine learning model requires only a small amount of data and does not need to be performed again when the temperature is decreased. The accuracy and efficiency of this method is demonstrated by computing the free energy of activation of the proton exchange reaction in the zeolite chabazite. Starting from an ab initio calculation based on a semilocal approximation of density functional theory, free energies based on significantly more expensive non-local van der Waals and hybrid functionals are obtained with only a few tens of additional single point calculations. In this way this work paves the route to quick free energy calculations using different levels of theory or approximations that would be too computationally expensive to be directly employed in molecular dynamics or Monte Carlo simulations.</div>


2020 ◽  
Author(s):  
Tomas Bucko ◽  
Monika Gešvandtnerová ◽  
Dario Rocca

<div>While free energies are fundamental thermodynamic quantities to characterize chemical reactions, their calculation based on ab initio theory is usually limited by the high computational cost. This is particularly true if multiple levels of theory have to be tested to establish their relative accuracy, if highly expensive quantum mechanical approximations are of interest, and also if several different temperatures have to be considered. We present an ab initio approach that effectively couples perturbation theory and machine learning to make ab initio free energy calculations more affordable. Starting from results based on a certain production ab initio theory, perturbation theory is applied to obtain free energies. The large number of single point calculations required by a brute force application of this approach are here significantly decreased by applying machine learning techniques. Importantly, the training of the machine learning model requires only a small amount of data and does not need to be performed again when the temperature is decreased. The accuracy and efficiency of this method is demonstrated by computing the free energy of activation of the proton exchange reaction in the zeolite chabazite. Starting from an ab initio calculation based on a semilocal approximation of density functional theory, free energies based on significantly more expensive non-local van der Waals and hybrid functionals are obtained with only a few tens of additional single point calculations. In this way this work paves the route to quick free energy calculations using different levels of theory or approximations that would be too computationally expensive to be directly employed in molecular dynamics or Monte Carlo simulations.</div>


2020 ◽  
Author(s):  
Tomas Bucko ◽  
Monika Gešvandtnerová ◽  
Dario Rocca

<div>While free energies are fundamental thermodynamic quantities to characterize chemical reactions, their calculation based on ab initio theory is usually limited by the high computational cost. This is particularly true if multiple levels of theory have to be tested to establish their relative accuracy, if highly expensive quantum mechanical approximations are of interest, and also if several different temperatures have to be considered. We present an ab initio approach that effectively couples perturbation theory and machine learning to make ab initio free energy calculations more affordable. Starting from results based on a certain production ab initio theory, perturbation theory is applied to obtain free energies. The large number of single point calculations required by a brute force application of this approach are here significantly decreased by applying machine learning techniques. Importantly, the </div><div>training of the machine learning model requires only a small amount of data and does not need to be </div><div>performed again when the temperature is decreased.</div><div>The accuracy and efficiency of this method is demonstrated by computing the free energy of activation of the </div><div>proton exchange reaction in the zeolite chabazite. Starting from an ab initio calculation based on a semilocal</div><div>approximation of density functional theory, free energies based on significantly </div><div>more expensive non-local van der Waals and hybrid functionals are obtained with only a few tens</div><div>of additional single point calculations. In this way this work paves the route to</div><div>quick free energy calculations using different levels of theory or approximations that would be</div><div>too computationally expensive to be directly employed in molecular dynamics or Monte Carlo simulations.</div>


2021 ◽  
Vol 5 (3) ◽  
Author(s):  
Suzanne K. Wallace ◽  
Anton S. Bochkarev ◽  
Ambroise van Roekeghem ◽  
Javier Carrasco ◽  
Alexander Shapeev ◽  
...  

2008 ◽  
Vol 59 (1) ◽  
pp. 45-48
Author(s):  
Oana Ciocirlan ◽  
Olga Iulian

This paper reports the viscosities measurements for the binary system dimethyl sulfoxide + 1,4-dimethylbenzene over the entire range of mole fraction at 298.15, 303.15, 313.15 and 323.15 K and atmospheric pressure. The experimental viscosities were correlated with the equations of Grunberg-Nissan, Katti-Chaudhri, Hind, Soliman and McAllister; the adjustable binary parameters have been obtained. The excess Gibbs energy of activation of viscous flow (G*E) has been calculated from the experimental measurements and the results were fitted to Redlich-Kister polynomial equation. The obtained negative excess Gibbs free energy of activation and negative Grunberg-Nissan interaction parameter are discussed in structural and interactional terms.


2011 ◽  
Vol 115 (23) ◽  
pp. 6239-6249 ◽  
Author(s):  
Stephan Thürmer ◽  
Robert Seidel ◽  
Bernd Winter ◽  
Milan Ončák ◽  
Petr Slavíček

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