CIFTER:  Automated Charge-State Determination for Peptide Tandem Mass Spectra

Seungjin Na; Eunok Paek; Cheolju Lee

doi:10.1021/ac702038q

CIFTER: Automated Charge-State Determination for Peptide Tandem Mass Spectra

Analytical Chemistry ◽

10.1021/ac702038q ◽

2008 ◽

Vol 80 (5) ◽

pp. 1520-1528 ◽

Cited By ~ 12

Author(s):

Seungjin Na ◽

Eunok Paek ◽

Cheolju Lee

Keyword(s):

Charge State ◽

Mass Spectra ◽

Tandem Mass ◽

Tandem Mass Spectra ◽

State Determination

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Charge State Determination of Peptide Tandem Mass Spectra Using Support Vector Machine (SVM)

IEEE Transactions on Information Technology in Biomedicine ◽

10.1109/titb.2010.2040287 ◽

2010 ◽

Vol 14 (3) ◽

pp. 552-558 ◽

Cited By ~ 8

Author(s):

An-Min Zou ◽

Jinhong Shi ◽

Jiarui Ding ◽

Fang-Xiang Wu

Keyword(s):

Support Vector Machine ◽

Charge State ◽

Mass Spectra ◽

Support Vector ◽

Tandem Mass ◽

Tandem Mass Spectra ◽

State Determination

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Peptide charge state determination of tandem mass spectra from low-resolution collision induced dissociation

Proteome Science ◽

10.1186/1477-5956-9-s1-s3 ◽

2011 ◽

Vol 9 (Suppl 1) ◽

pp. S3 ◽

Cited By ~ 3

Author(s):

Jinhong Shi ◽

Fang-Xiang Wu

Keyword(s):

Charge State ◽

Mass Spectra ◽

Collision Induced Dissociation ◽

Tandem Mass ◽

Low Resolution ◽

Tandem Mass Spectra ◽

State Determination ◽

Peptide Charge

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Peptide charge state determination for low-resolution tandem mass spectra

2005 IEEE Computational Systems Bioinformatics Conference (CSB'05) ◽

10.1109/csb.2005.44 ◽

2005 ◽

Cited By ~ 7

Author(s):

A.A. Klammer ◽

C.C. Wu ◽

M.J. MacCoss ◽

W.S. Noble

Keyword(s):

Charge State ◽

Mass Spectra ◽

Tandem Mass ◽

Low Resolution ◽

Tandem Mass Spectra ◽

State Determination ◽

Peptide Charge

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Peptide charge state determination of tandem mass spectra from low-resolution collision induced dissociation

2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) ◽

10.1109/bibm.2010.5706569 ◽

2010 ◽

Author(s):

Jinhong Shi ◽

Fang-Xiang Wu

Keyword(s):

Charge State ◽

Mass Spectra ◽

Collision Induced Dissociation ◽

Tandem Mass ◽

Low Resolution ◽

Tandem Mass Spectra ◽

State Determination ◽

Peptide Charge

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Charge state determination of peptide tandem mass spectra using support vector machine (SVM)

2008 8th IEEE International Conference on BioInformatics and BioEngineering ◽

10.1109/bibe.2008.4696680 ◽

2008 ◽

Author(s):

An-Min Zou ◽

Jiarui Ding ◽

Jin-Hong Shi ◽

Fang-Xiang Wu

Keyword(s):

Support Vector Machine ◽

Charge State ◽

Mass Spectra ◽

Support Vector ◽

Tandem Mass ◽

Tandem Mass Spectra ◽

State Determination

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Precursor Charge State Prediction for Electron Transfer Dissociation Tandem Mass Spectra

Journal of Proteome Research ◽

10.1021/pr1006685 ◽

2010 ◽

Vol 9 (10) ◽

pp. 5438-5444 ◽

Cited By ~ 7

Author(s):

Vagisha Sharma ◽

Jimmy K. Eng ◽

Sergey Feldman ◽

Priska D. von Haller ◽

Michael J. MacCoss ◽

...

Keyword(s):

Electron Transfer ◽

Charge State ◽

Mass Spectra ◽

Electron Transfer Dissociation ◽

Tandem Mass ◽

Tandem Mass Spectra ◽

State Prediction

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SILVER helps assign peptides to tandem mass spectra using intensity-based scoring

Journal of the American Society for Mass Spectrometry ◽

10.1016/s1044-0305(04)00167-9 ◽

2004 ◽

Vol 15 (6) ◽

pp. 910-912

Author(s):

F GIBBONS

Keyword(s):

Mass Spectra ◽

Tandem Mass ◽

Tandem Mass Spectra

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FPTMS: Frequency-based approach to identify the peptide from the low-energy collision-induced dissociation tandem mass spectra

Journal of Proteomics ◽

10.1016/j.jprot.2021.104116 ◽

2021 ◽

Vol 235 ◽

pp. 104116

Author(s):

Sangeetha Ramachandran ◽

Tessamma Thomas

Keyword(s):

Mass Spectra ◽

Low Energy ◽

Collision Induced Dissociation ◽

Tandem Mass ◽

Energy Collision ◽

Tandem Mass Spectra

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On de novo interpretation of tandem mass spectra for peptide identification

Proceedings of the seventh annual international conference on Computational molecular biology - RECOMB '03 ◽

10.1145/640075.640077 ◽

2003 ◽

Cited By ~ 25

Author(s):

Vineet Bafna ◽

Nathan Edwards

Keyword(s):

Mass Spectra ◽

De Novo ◽

Peptide Identification ◽

Tandem Mass ◽

Tandem Mass Spectra

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MS_Piano: A Software Tool for Annotating Peaks in CID Tandem Mass Spectra of Peptides and N-Glycopeptides

Journal of Proteome Research ◽

10.1021/acs.jproteome.1c00324 ◽

2021 ◽

Author(s):

Xiaoyu Yang ◽

Pedatsur Neta ◽

Yuri A. Mirokhin ◽

Dmitrii V. Tchekhovskoi ◽

Concepcion A. Remoroza ◽

...

Keyword(s):

Mass Spectra ◽

Software Tool ◽

Tandem Mass ◽

Tandem Mass Spectra

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