Improved Mass Analysis of Oligoribonucleotides by13C,15N Double Depletion and Electrospray Ionization FT-ICR Mass Spectrometry

2004 ◽  
Vol 76 (6) ◽  
pp. 1804-1809 ◽  
Author(s):  
Ying Xiong ◽  
Kersten Schroeder ◽  
Nancy L. Greenbaum ◽  
Christopher L. Hendrickson ◽  
Alan G. Marshall
2009 ◽  
Vol 23 (1) ◽  
pp. 349-355 ◽  
Author(s):  
Mmilili M. Mapolelo ◽  
Lateefah A. Stanford ◽  
Ryan P. Rodgers ◽  
Andrew T. Yen ◽  
Justin D. Debord ◽  
...  

2001 ◽  
Vol 79 (5-6) ◽  
pp. 546-551 ◽  
Author(s):  
Ryan P Rodgers ◽  
Christopher L Hendrickson ◽  
Mark R Emmett ◽  
Alan G Marshall ◽  
Mark Greaney ◽  
...  

Petroporphyrin compositional analysis of a heavy crude oil has been realized by isolation and subsequent ESI-FT-ICR mass spectrometric analysis of the porphyrin-containing fractions. Vanadium octaethyl (V=O(II)OEP) and nickel octaethyl (Ni(II)OEP) porphyrin standards were analyzed to determine favorable electrospray ionization conditions and provide insight as to the molecular species present (e.g., adducts, multimers). Standard V=O(II)OEP and Ni(II)OEP solutions revealed the presence of both monomer and dimer species with a greater relative abundance of monomers. In contrast, mass spectral analysis of a porphyrin fraction from Cerro Negro crude oil was dominated by dimeric species. MS3 analysis identified a dioctylphthalate (DOP) contaminant, likely introduced during fractionation of the crude oil. DOP-porphyrin complexes and porphyrin-porphyrin dimers were then identified. Infrared multiphoton dissociation (IRMPD) of dimeric species produced the corresponding monomers with minimal fragmentation. The monomeric petroporphyrins were analyzed to reveal the metal (Ni(II) or V=O(II)), porphyrin type (e.g., etio vs. DPEP), and distribution of alkylation.Key words: petroporphyrin, porphyrin, petroleum, electrospray ionization, mass spectrometry, Fourier transform, ion cyclotron resonance, ICR, FT-ICR, FTMS.


2005 ◽  
Vol 11 (5) ◽  
pp. 519-524 ◽  
Author(s):  
Nikolay Youhnovski ◽  
Irena Matečko ◽  
Maria Šamalikova ◽  
Rita Grandori

Protein charge-state distributions (CSDs) in electrospray ionization mass spectrometry (ESI-MS) represent a sensitive tool to probe different conformational states. We describe here the effect of trifluoroethanol (TFE) on cytochrome c equilibrium unfolding at different pH by nano-ESI-MS. While even low concentrations of TFE destabilize the protein native structure at low pH, a TFE content of 2.5%–5% is found to favor cyt c folding at pH ∼7. Furthermore, we perform a comparison of CSDs obtained by time-of-flight (ToF) and Fourier transform ion cyclotron resonance (FT-ICR) mass analyzers. To this purpose, we analyze spectra of cyt c in the presence of different kinds of denaturants. In particular, experiments with 1-propanol also suggest that by using FT-ICR-MS, as previously observed on an ESI-ToF instrument, CSDs do not appear to be controlled by the solvent surface tension as predicted by the Rayleigh-charge model. Moreover, there is general good agreement in conformational effects revealed by the different instruments under several buffer conditions. Nevertheless, the ToF instrument appears to discriminate better between unfolded and partially unfolded forms.


2014 ◽  
Vol 116 ◽  
pp. 216-224 ◽  
Author(s):  
Caline A. Destefani ◽  
Larissa C. Motta ◽  
Gabriela Vanini ◽  
Lindamara M. Souza ◽  
João Francisco A. Filho ◽  
...  

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