Cross correlation of CIELAB color reflectance data from archive photographs and line-scan images of sediment

2019 ◽  
Vol 93 ◽  
pp. 267-283
Author(s):  
Della K. Murton ◽  
Simon J. Crowhurst
Keyword(s):  
Deep Sea ◽  
Cross Correlation ◽  
Surface Preparation ◽  
Sediment Surface ◽  
Line Scan ◽  
Ambient Lighting ◽  
Deep Sea Sediments ◽  
Image Set ◽  
Integrated Light Source ◽  
Reflectance Data

AbstractArchive color photographs—particularly of sites where sediment is no longer available—are an underused resource that potentially contains detailed paleoenvironmental information. To investigate this potential, two sets of digital images were taken, at different times, of loess, glaciolacustrine, and deep-sea sediments. The first image set was taken using standard digital cameras. Lighting conditions and sediment surface preparation varied, in a similar way to characteristics likely to be encountered in archive photographs. The second image set was taken by a high-resolution, line-scan camera with an integrated light source. CIELAB (Commission Internationale de l'Eclairage) color reflectance data were obtained from both image sets and analyzed by cross correlation. Of the three reflectance parameters (L*, a*, and b*), L* reflectance is the most compromised by differences in ambient lighting or moisture content. Textural distinctions appear to be an important factor influencing the cross correlations and produce multiple, relatively weak solutions for the glaciolacustrine sediments, whereas the texturally uniform loess and deep-sea sediments produce a single, best-fit solution. Comparison of a* reflectance records from an undated marine sequence with a chronologically constrained sequence from the same site indicates the potential to apply color reflectance to produce preliminary age models.

scholarly journals Impact of Viral Lysis on the Composition of Bacterial Communities and Dissolved Organic Matter in Deep-Sea Sediments

Viruses ◽  
2020 ◽  
Vol 12 (9) ◽  
pp. 922
Author(s):  
Mara E. Heinrichs ◽  
Dennis A. Tebbe ◽  
Bernd Wemheuer ◽  
Jutta Niggemann ◽  
Bert Engelen
Keyword(s):  
Organic Matter ◽  
Dissolved Organic Matter ◽  
Deep Sea ◽  
Bacterial Communities ◽  
High Resolution Mass Spectrometry ◽  
Sediment Surface ◽  
Mortality Factor ◽  
Viral Lysis ◽  
Deep Sea Sediments ◽  
Induction Experiment

Viral lysis is a main mortality factor for bacteria in deep-sea sediments, leading to changing microbial community structures and the release of cellular components to the environment. Nature and fate of these compounds and the role of viruses for microbial diversity is largely unknown. We investigated the effect of viruses on the composition of bacterial communities and the pool of dissolved organic matter (DOM) by setting up virus-induction experiments using mitomycin C with sediments from the seafloor of the Bering Sea. At the sediment surface, no substantial prophage induction was detected, while incubations from 20 cm below seafloor showed a doubling of the virus-to-cell ratio. Ultra-high resolution mass spectrometry revealed an imprint of cell lysis on the molecular composition of DOM, showing an increase of molecular formulas typical for common biomolecules. More than 50% of these compounds were removed or transformed during incubation. The remaining material potentially contributed to the pool of refractory DOM. Next generation sequencing of the bacterial communities from the induction experiment showed a stable composition over time. In contrast, in the non-treated controls the abundance of dominant taxa (e.g., Gammaproteobacteria) increased at the expense of less abundant phyla. Thus, we conclude that viral lysis was an important driver in sustaining bacterial diversity, consistent with the “killing the winner” model.

scholarly journals Mechanism and Influencing Factors of REY Enrichment in Deep-Sea Sediments

Minerals ◽  
2021 ◽  
Vol 11 (2) ◽  
pp. 196
Author(s):  
Jiangbo Ren ◽  
Yan Liu ◽  
Fenlian Wang ◽  
Gaowen He ◽  
Xiguang Deng ◽  
...  
Keyword(s):  
Deep Sea ◽  
Research Progress ◽  
Bottom Current ◽  
Knowledge Map ◽  
P2o5 Content ◽  
Deep Sea Sediments ◽  
Potential Resource ◽  
And Migration ◽  
Adsorption Desorption ◽  
Sediment Interface

Deep-sea sediments with high contents of rare-earth elements and yttrium (REY) are expected to serve as a potential resource for REY, which have recently been proved to be mainly contributed by phosphate component. Studies have shown that the carriers of REY in deep-sea sediments include aluminosilicate, Fe-Mn oxyhydroxides, and phosphate components. The ∑REY of the phosphate component is 1–2 orders of magnitude higher than those of the other two carriers, expressed as ∑REY = 0.001 × [Al2O3] − 0.002 × [MnO] + 0.056 × [P2O5] − 32. The sediment P2O5 content of 1.5% explains 89.1% of the total variance of the sediment ∑REY content. According to global data, P has a stronger positive correlation with ∑REY compared with Mn, Fe, Al, etc.; 45.5% of samples have a P2O5 content of less than 0.25%, and ∑REY of not higher than 400 ppm. The ∑REY of the phosphate component reaches n × 104 ppm, much higher than that of marine phosphorites and lower than that of REY-phosphate minerals, which are called REY-rich phosphates in this study. The results of microscopic observation and separation by grain size indicate that the REY-rich phosphate component is mainly composed of bioapatite. When ∑REY > 2000 ppm, the average CaO/P2O5 ratio of the samples is 1.55, indicating that the phosphate composition is between carbonate fluoroapatite and hydroxyfluorapatite. According to a knowledge map of sediment elements, the phosphate component is mainly composed of P, Ca, Sr, REY, Sc, U, and Th, and its chemical composition is relatively stable. The phosphate component has a negative Ce anomaly and positive Y anomaly, and a REY pattern similar to that of marine phosphorites and seawater. After the early diagenesis process (biogeochemistry, adsorption, desorption, transformation, and migration), the REY enrichment in the phosphate component is completed near the seawater/sediment interface. In the process of REY enrichment, the precipitation and enrichment of P is critical. According to current research progress, the REY enrichment is the result of comprehensive factors, including low sedimentation rate, high ∑REY of the bottom seawater, a non-carbonate depositional environment, oxidation conditions, and certain bottom current conditions.

The degradation activities for three seaweed polysaccharides of Shewanella sp. WPAGA9 isolated from deep‐sea sediments

2021 ◽  
Author(s):  
Dingquan Wang ◽  
Jianxin Wang ◽  
Runying Zeng ◽  
Jie Wu ◽  
Shijia V. Michael ◽  
...  
Keyword(s):  
Deep Sea ◽  
Deep Sea Sediments

Regional study of microplastics in surface waters and deep sea sediments south of the Algarve Coast

2020 ◽  
Vol 40 ◽  
pp. 101488
Author(s):  
Simone Lechthaler ◽  
Jan Schwarzbauer ◽  
Klaus Reicherter ◽  
Georg Stauch ◽  
Holger Schüttrumpf
Keyword(s):  
Surface Waters ◽  
Deep Sea ◽  
Regional Study ◽  
Deep Sea Sediments

scholarly journals Primary Production in the Water Column as Major Structuring Element of the Biogeographical Distribution and Function of Archaea in Deep-Sea Sediments of the Central Pacific Ocean

Archaea ◽  
2019 ◽  
Vol 2019 ◽  
pp. 1-12 ◽  
Author(s):  
Franziska Wemheuer ◽  
Avril Jean Elisabeth von Hoyningen-Huene ◽  
Marion Pohlner ◽  
Julius Degenhardt ◽  
Bert Engelen ◽  
...  
Keyword(s):  
Pacific Ocean ◽  
Primary Production ◽  
Deep Sea ◽  
Archaeal Community ◽  
Central Pacific ◽  
Central Pacific Ocean ◽  
Deep Sea Sediments ◽  
And Function ◽  
Functional Profiles ◽  
Archaeal Communities

Information on environmental conditions shaping archaeal communities thriving at the seafloor of the central Pacific Ocean is limited. The present study was conducted to investigate the diversity, composition, and function of both entire and potentially active archaeal communities within Pacific deep-sea sediments. For this purpose, sediment samples were taken along the 180° meridian of the central Pacific Ocean. Community composition and diversity were assessed by Illumina tag sequencing targeting archaeal 16S rRNA genes and transcripts. Archaeal communities were dominated by CandidatusNitrosopumilus(Thaumarchaeota) and other members of theNitrosopumilaceae(Thaumarchaeota), but higher relative abundances of the Marine Group II (Euryarchaeota) were observed in the active compared to the entire archaeal community. The composition of the entire and the active archaeal communities was strongly linked to primary production (chlorophyll content), explaining more than 40% of the variance. Furthermore, we found a strong correlation of the entire archaeal community composition to latitude and silicic acid content, while the active community was significantly correlated with primary production and ferric oxide content. We predicted functional profiles from 16S rRNA data to assess archaeal community functions. Latitude was significantly correlated with functional profiles of the entire community, whereas those of the active community were significantly correlated with nitrate and chlorophyll content. The results of the present study provide first insights into benthic archaeal communities in the Pacific Ocean and environmental conditions shaping their diversity, distribution, and function. Additionally, they might serve as a template for further studies investigating archaea colonizing deep-sea sediments.

scholarly journals Mg isotopic compositions of stony spherules from deep-sea sediments.

1992 ◽  
Vol 26 (1) ◽  
pp. 29-36 ◽  
Author(s):  
Keiji Misawa ◽  
Kazuo Yamakoshi ◽  
Noboru Nakamura
Keyword(s):  
Deep Sea ◽  
Isotopic Compositions ◽  
Deep Sea Sediments

Microbial diversity in deep-sea sediments from the Menez Gwen hydrothermal vent system of the Mid-Atlantic Ridge

2015 ◽  
Vol 24 ◽  
pp. 343-355 ◽  
Author(s):  
Teresa Cerqueira ◽  
Diogo Pinho ◽  
Conceição Egas ◽  
Hugo Froufe ◽  
Bjørn Altermark ◽  
...  
Keyword(s):  
Microbial Diversity ◽  
Deep Sea ◽  
Hydrothermal Vent ◽  
Deep Sea Sediments ◽  
Mid Atlantic Ridge ◽  
Menez Gwen
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