Breaking down the lithification bias: the effect of preferential sampling of larger specimens on the estimate of species richness, evenness, and average specimen size

Paleobiology ◽  
2018 ◽  
Vol 44 (2) ◽  
pp. 326-345 ◽  
Author(s):  
Andrew D. Hawkins ◽  
Michał Kowalewski ◽  
Shuhai Xiao

AbstractLithification, the transition of unconsolidated sediments to fully indurated rocks, can potentially bias estimates of species richness, evenness, and body size distribution derived from fossil assemblages. Fossil collections made from well-indurated rocks consistently exhibit lower species richness, lower evenness, and larger average specimen size relative to collections made from unconsolidated sediments, even when collections are drawn from the same assemblage. This phenomenon is known as “lithification bias.” While the bias itself has been demonstrated empirically, much less attention has been paid to its causes. Proposed causes include taphonomic processes (e.g., destruction of small specimens during early diagenesis) and methodological differences (e.g., sieving vs. counting specimens on outcrops, bedding surfaces, or mechanically split surfaces). Here we investigate the potential effects of preferential intersection that could also result in a methodologically related bias: the preferential sampling of larger specimens relative to smaller ones when fossils are counted on rock surfaces. We used an analogue model to simulate preferential intersection (fossil collection via splitting fossiliferous rocks) and compare the results with a random-draw model that approximates the effects of sieving. The model was parameterized using nine different combinations of species abundance and species size distributions. The results show that, with rare exceptions, species richness is 5–23% lower, evenness 5–25% lower, and average specimen size 24–150% larger in preferential-intersection than in random-draw simulations. We conclude that preferential intersection can impose a significant bias independent of other mechanisms (e.g., preferential destruction of smaller specimens during diagenetic or sampling processes), that the magnitude of this bias is partially dependent on the species abundance and size distributions, and that this bias alone does not fully account for empirically observed lithification bias on species richness (i.e., other sources of bias are also at work).

Author(s):  
Alessandra R. Kortz ◽  
Anne E. Magurran

AbstractHow do invasive species change native biodiversity? One reason why this long-standing question remains challenging to answer could be because the main focus of the invasion literature has been on shifts in species richness (a measure of α-diversity). As the underlying components of community structure—intraspecific aggregation, interspecific density and the species abundance distribution (SAD)—are potentially impacted in different ways during invasion, trends in species richness provide only limited insight into the mechanisms leading to biodiversity change. In addition, these impacts can be manifested in distinct ways at different spatial scales. Here we take advantage of the new Measurement of Biodiversity (MoB) framework to reanalyse data collected in an invasion front in the Brazilian Cerrado biodiversity hotspot. We show that, by using the MoB multi-scale approach, we are able to link reductions in species richness in invaded sites to restructuring in the SAD. This restructuring takes the form of lower evenness in sites invaded by pines relative to sites without pines. Shifts in aggregation also occur. There is a clear signature of spatial scale in biodiversity change linked to the presence of an invasive species. These results demonstrate how the MoB approach can play an important role in helping invasion ecologists, field biologists and conservation managers move towards a more mechanistic approach to detecting and interpreting changes in ecological systems following invasion.


1985 ◽  
Vol 63 (7) ◽  
pp. 1519-1530 ◽  
Author(s):  
Barbara L. Peckarsky

Experiments in Colorado and New York streams assessed the effects of predaceous stoneflies on benthic invertebrate community establishment in enclosures providing uncolonized habitat. Aspects of prey community structure measured were density, species richness, relative species abundance, and body size. Unexpected inorganic sediment deposition allowed evaluation of direct effects on Colorado stream benthos and indirect effects on predation. Predaceous perlids and perlodids consistently reduced the density and, therefore, rate of prey community establishment in enclosures. Although New York perlids disproportionately reduced densities of some prey species, Colorado stoneflies caused nonsignificant declines in individual prey species densities, the composite effect of which was a significant whole-community response. Predators did not affect prey species richness nor change the taxonomic composition (species additions or deletions) of communities colonizing enclosures. However, the relative abundance of prey taxa differed significantly between cages with and without predators. Most species showed no size differences between individuals colonizing enclosures with predators and those colonizing control enclosures, with a few interesting exceptions. The deposition of silt eliminated the predator effects on prey density, as well as directly causing significant reductions in many Colorado benthic populations. This result demonstrates that abiotic disturbances can periodically override the effects of predation on stream insect communities colonizing enclosures.


2021 ◽  
Vol 16 (2) ◽  
pp. 155-158
Author(s):  
Ezenwatah Ifeoma Susan ◽  
Ukpaka Chukwujekwu Gratius ◽  
Onyemeka Regland Michael ◽  
Afulukwe Stella Chinyere ◽  
Okoye Elochukwu Chidubem Sunday

The study on the floral diversity of Neni-Nimo watershed in Anaocha L.G.A. of Anambra State was conducted between November 2009 and July 2020. The aim of the study was to find out the species richness and the floral biodiversity of the watershed. In this study, the watershed was divided into three sites, the forested site, the fallow site and the current usage site. The experiment was laid out in a Randomized Complete Block Design. The ecological methods used in this study are the Point Centred Plotless Count sampling technique for areas dominated by trees while the Plot Count technique using quadrats were used for sampling the areas dominated by forbs, shrubs, climbers and grasses. The vegetation data collected was used to estimate the species richness of the different plant growth forms, the diversity and equitability of the various growth forms encountered were calculated using Shanon Weiners diversity index. The Shanno Weiners diversity index shows that the forested areas had the highest floral biodiversity than the fallow and current usage area. Regression analysis shows that a significant relationship exists between species abundance and floral biodiversity at a p-value of <0.05 for all plant growth forms in the watershed except for grasses and as abundance increases, diversity also increases.


2019 ◽  
Vol 12 (1) ◽  
pp. 60-67 ◽  
Author(s):  
Shannon L. Clark ◽  
Derek J. Sebastian ◽  
Scott J. Nissen ◽  
James R. Sebastian

AbstractMinimizing the negative ecological impacts of exotic plant invasions is one goal of land management. Using selective herbicides is one strategy to achieve this goal; however, the unintended consequences of this strategy are not always fully understood. The recently introduced herbicide indaziflam has a mode of action not previously used in non-crop weed management. Thus, there is limited information about the impacts of this active ingredient when applied alone or in combination with other non-crop herbicides. The objective of this research was to evaluate native species tolerance to indaziflam and imazapic applied alone and with other broadleaf herbicides. Replicated field plots were established at two locations in Colorado with a diverse mix of native forbs and grasses. Species richness and abundance were compared between the nontreated control plots and plots where indaziflam and imazapic were applied alone and in combination with picloram and aminocyclopyrachlor. Species richness and abundance did not decrease when indaziflam or imazapic were applied alone; however, species abundance was reduced by treatments containing picloram and aminocyclopyrachlor. Species richness was only impacted at one site 1 yr after treatment (YAT) by these broadleaf herbicides. Decreases in abundance were mainly due to reductions in forbs that resulted in a corresponding increase in grass cover. Our data suggest that indaziflam will control downy brome (Bromus tectorumL.) for multiple years without reduction in perennial species richness or abundance. IfB. tectorumis present with perennial broadleaf weeds requiring the addition of herbicides like picloram or aminocyclopyrachlor, forb abundance could be reduced, and in some cases there could be a temporary reduction in perennial species richness.


2004 ◽  
Vol 118 (4) ◽  
pp. 530 ◽  
Author(s):  
Greg R. Pohl ◽  
David W. Langor ◽  
Jean-François Landry ◽  
John R. Spence

Lepidoptera were collected, primarily via UV light trap, for three seasons in the boreal mixedwood forest near Lac La Biche, Alberta. A total of 11,111 specimens were collected, representing 41 families and 438 species. A species list with flight times is presented. The total Lepidoptera community was estimated to be 546 ± 23.34 species. Abundance and species richness peaked in late July. Thirty-five species constitute new records for Alberta, while one species, Acanthopteroctetes bimaculata, is a new record for Canada, and the first record of the family Acanthopteroctetidae in Canada.


2002 ◽  
Vol 32 (1) ◽  
pp. 38-51 ◽  
Author(s):  
Steven G Newmaster ◽  
F Wayne Bell

In northern forests, cryptogams (spore producing plants) occupy a key position in forest ecosystem diversity and function. Forest harvesting and silvicultural practices have the potential to reduce cryptogam diversity. This project uses four blocks that were mechanically site prepared, planted with a single conifer species, and subsequently subjected to five conifer release treatments: (1) motor-manual cleaning, (2) mechanical brush cutting, (3) aerial application of triclopyr, (4) aerial application of glyphosate, and (5) control (untreated clearcut). Five 10 × 10 m subplots were installed in each of the five treatment plots and the uncut forest on the four blocks. Botanical surveys were conducted before and 1–5 years after treatments. Species richness and abundance, Shannon's and Heip's indices, and rank abundance diagrams clearly show that richness and abundance were affected by silvicultural treatments. Vegetation management treatments resulted in significant reductions in cryptogam diversity, to the point that only a few colonists and drought-tolerant species remained. Cryptogam diversity was ranked in the following order: forest > clearcut > mechanical clearing > herbicide treatment. Herbicide treatments had the greatest initial effect on species richness, species abundance, and diversity indices. Cryptogam diversity showed signs of recovery 5 years after treatments. Missed strips (untreated areas) within a clearcut provided a refuge for remnant communities of forest cryptogams that could play a key role in the rehabilitation forest diversity.


2021 ◽  
Vol 7 (1) ◽  
Author(s):  
Prakhar Rawal ◽  
Swati Kittur ◽  
Murali Krishna Chatakonda ◽  
K S Gopi Sundar

Abstract Urbanisation can limit species persistence and bias composition of functional guilds with serious consequences for ecosystem functioning and conservation planning. Standardised biodiversity surveys are missing at most tropical urban cities where biodiversity levels are high alongside rapidly increasing rates of urbanisation. We explored the utility of time-bound surveys to document winter birds at ponds (wetlands ≤ 5 ha) in Delhi, India at two different times of the day (morning and evening) and in areas with varying extents of wetlands. Systematic surveys at 39 ponds during January–March 2020 yielded an estimated 173 ± 22 bird species (∼37% of Delhi’s birds). The total bird species assemblage at ponds did not vary significantly with time of day, but β-diversity increased marginally with increasing extent of wetlands. Total bird abundance and species richness varied substantially with time of day, with differences apparent across several species rich functional feeding and habitat guilds. Abundance and species richness of some guilds, including species-poor guilds, varied in ponds located in areas with differing extent of wetlands. Reliable and comparable measures of species abundance and species richness (both total and across functional guilds)— metrics commonly used to set research and conservation priorities—in urban habitats can be obtained after appropriately standardising field effort. Such standardised efforts can help underscore the importance of maintaining and improving erstwhile-ignored habitats such as unprotected ponds that are providing refugia to hundreds of bird species in mega-cities like Delhi.


2020 ◽  
Vol 55 (3) ◽  
pp. 329-343
Author(s):  
Kenneth W. McCravy ◽  
Jason E. Willand

Abstract The Carabidae is a diverse family of beetles with many species of interest in conservation and biological control. Carabid beetle adult seasonal activity patterns were studied in a west-central Illinois forest/reconstructed tallgrass prairie matrix over a 2-yr period using pitfall traps. We found a threefold or greater difference in carabid abundance between years. Despite lower abundance, a second year of sampling yielded seven previously undetected species. Abundance and species richness were greatest in May–July and lower in August–October. Relative abundance and species richness were consistent among months between years. Shannon diversity and effective number of species were lowest in June and July. Cyclotrachelus sodalis (LeConte) and Chlaenius platyderus Chaudoir were the two most abundant species, comprising 54.3% of total captures. These species were most abundant in July and June, respectively. Most species showed greatest abundance in spring or early summer, and declined thereafter. Collections of several species were suggestive of bimodal seasonal patterns. Carabid species composition differed significantly among months, but not between years. Our results document seasonal variation in carabid abundance and species composition, and show that sampling throughout the growing season, and multiple sampling years, provide substantial benefits for assessments of carabid diversity in this region.


2011 ◽  
Vol 6 (1) ◽  
pp. 118-129 ◽  
Author(s):  
Ivan Gelbič ◽  
Jiří Olejníček

AbstractEcological investigations of long-legged flies (Dolichopodidae) were carried out in wet meadow wetlands near České Budějovice, Czech Republic. Sampling was performed during the adult flies’ seasonal activity (March–October) in 2002, 2003 and 2004 using yellow pan traps, Malaise traps, emergence traps, and by sweeping. Altogether 5,697 specimens of 78 species of Dolichopodidae were collected, identified and analysed. The study examined community structure, species abundance, and diversity (Shannon-Weaver’s index - H’; Sheldon’s equitability index - E). Chrysotus cilipes, C. gramineus and Dolichopus ungulatus were the most abundant species in all three years. Species richness and diversity seem strongly affected by soil moisture.


Sign in / Sign up

Export Citation Format

Share Document