scholarly journals Reconstructing geographic range-size dynamics from fossil data

Paleobiology ◽  
2018 ◽  
Vol 44 (1) ◽  
pp. 25-39 ◽  
Author(s):  
Simon A. F. Darroch ◽  
Erin E. Saupe
Keyword(s):  
Convex Hull ◽  
Spatial Data ◽  
Fossil Record ◽  
Geographic Range ◽  
Great Circle ◽  
Range Size ◽  
Data Set ◽  
Reconstruction Methods ◽  
Point Data ◽  
Great Circle Distance

AbstractEcologists and paleontologists alike are increasingly using the fossil record as a spatial data set, in particular to study the dynamics and distribution of geographic range sizes among fossil taxa. However, no attempts have been made to establish how accurately range sizes and range-size dynamics can be preserved. Two fundamental questions are: Can common paleo range-size reconstruction methods accurately reproduce known species’ ranges from locality (i.e., point) data? And, are some reconstruction methods more reliable than others? Here, we develop a methodological framework for testing the accuracy of commonly used paleo range-size reconstruction methods (maximum latitudinal range, maximum great-circle distance, convex hull, and alpha convex hull) in different extinction-related biogeographic scenarios. We use the current distribution of surface water bodies as a proxy for “preservable area,” in which to test the performance of the four methods. We find that maximum great-circle distance and convex-hull methods most reliably capture changes in range size at low numbers of fossil sites, whereas convex hull performs best at predicting the distribution of “victims” and “survivors” in hypothetical extinction scenarios. Our results suggest that macroevolutionary and macroecological patterns in the relatively recent past can be studied reliably using only a few fossil occurrence sites. The accuracy of range-size reconstruction undoubtedly changes through time with the distribution and area of fossiliferous sediments; however, our approach provides the opportunity to systematically calibrate the quality of the spatial fossil record in specific environments and time intervals, and to delineate the conditions under which paleobiologists can reconstruct paleobiogeographical, macroecological, and macroevolutionary patterns over critical intervals in Earth history.

scholarly journals The effects of geographic range size and abundance on extinction during a time of “sluggish”’ evolution

Paleobiology ◽  
2020 ◽  
pp. 1-14
Author(s):  
Michelle M. Casey ◽  
Erin E. Saupe ◽  
Bruce S. Lieberman
Keyword(s):  
North American ◽  
Fossil Record ◽  
Extinction Risk ◽  
Geographic Range ◽  
Range Size ◽  
Late Paleozoic ◽  
The North ◽  
Geographic Range Size ◽  
The Relationship ◽  
Habitat Tracking

Abstract Geographic range size and abundance are important determinants of extinction risk in fossil and extant taxa. However, the relationship between these variables and extinction risk has not been tested extensively during evolutionarily “quiescent” times of low extinction and speciation in the fossil record. Here we examine the influence of geographic range size and abundance on extinction risk during the late Paleozoic (Mississippian–Permian), a time of “sluggish” evolution when global rates of origination and extinction were roughly half those of other Paleozoic intervals. Analyses used spatiotemporal occurrences for 164 brachiopod species from the North American midcontinent. We found abundance to be a better predictor of extinction risk than measures of geographic range size. Moreover, species exhibited reductions in abundance before their extinction but did not display contractions in geographic range size. The weak relationship between geographic range size and extinction in this time and place may reflect the relative preponderance of larger-ranged taxa combined with the physiographic conditions of the region that allowed for easy habitat tracking that dampened both extinction and speciation. These conditions led to a prolonged period (19–25 Myr) during which standard macroevolutionary rules did not apply.

Biotic influences on species duration: interactions between traits in marine molluscs

Paleobiology ◽  
2010 ◽  
Vol 36 (2) ◽  
pp. 204-223 ◽  
Author(s):  
James S. Crampton ◽  
Roger A. Cooper ◽  
Alan G. Beu ◽  
Michael Foote ◽  
Bruce A. Marshall
Keyword(s):  
Body Size ◽  
Large Range ◽  
Geographic Range ◽  
Range Size ◽  
Biological Traits ◽  
Data Set ◽  
Marine Molluscs ◽  
Larval Type ◽  
Feeding Type ◽  
Life Mode

We analyze relationships among a range of ecological and biological traits—geographic range size, body size, life mode, larval type, and feeding type—in order to identify those traits that are associated significantly with species duration in New Zealand Cenozoic marine molluscs, during a time of background extinction. Using log-linear modeling, we find that bivalves have only a small number of simple, two-way associations between the studied traits and duration. In contrast, gastropods display more complex interactions involving three-way associations between traits, a pattern that suggests greater macroecological complexity of gastropods. This is not an artifact caused by the larger number of gastropods than bivalves in our data set. We used stratified randomized resampling of families to test for associations between traits that might result from shared inheritance rather than ecological trait interactions; we found no evidence of phylogenetic effects in any associations examined. The relationships revealed by our study should serve to constrain the range of possible biological mechanisms that underlie these relationships. As previously observed, two-way associations are present between large geographic range and increased duration, and between large geographic range and large body size, in both bivalves and gastropods. In gastropods, planktotrophic larval type is associated with large range size through a three-way interaction that also involves duration; there is no direct association of larval type and geographic range. Gastropods also display two-way associations between duration and life mode, and duration and feeding type. We note that in gastropods, an infaunal life mode is associated with large range size, whereas in bivalves infaunality is associated with reduced range size.

scholarly journals A MODIFIED PÓLYA URN PROCESS AND AN INDEX FOR SPATIAL DISTRIBUTIONS WITH VOLUME EXCLUSION

2011 ◽  
Vol 53 (2) ◽  
pp. 122-133 ◽  
Author(s):  
BENJAMIN J. BINDER ◽  
EMILY J. HACKETT-JONES ◽  
JONATHAN TUKE ◽  
KERRY A. LANDMAN
Keyword(s):  
Spatial Data ◽  
Complete Spatial Randomness ◽  
Data Set ◽  
Standard Formula ◽  
Pólya Urn ◽  
Polya Distribution ◽  
Order Of Magnitude ◽  
Polya Urn ◽  
Spatial Data Sets ◽  
Point Data

AbstractSpatial data sets can be analysed by counting the number of objects in equally sized bins. The bin counts are related to the Pólya urn process, where coloured balls (for example, white or black) are removed from the urn at random. If there are insufficient white or black balls for the prescribed number of trials, the Pólya urn process becomes untenable. In this case, we modify the Pólya urn process so that it continues to describe the removal of volume within a spatial distribution of objects. We determine when the standard formula for the variance of the standard Pólya distribution gives a good approximation to the true variance. The variance quantifies an index for assessing whether a spatial point data set is at its most randomly distributed state, called the complete spatial randomness (CSR) state. If the bin size is an order of magnitude larger than the size of the objects, then the standard formula for the CSR limit is indicative of when the CSR state has been attained. For the special case when the object size divides the bin size, the standard formula is in fact exact.

scholarly journals Biological and extrinsic correlates of extinction risk in Chinese lizards

2021 ◽  
Author(s):  
Yuxi Zhong ◽  
Chuanwu Chen ◽  
Yanping Wang
Keyword(s):  
Body Size ◽  
Extinction Risk ◽  
Species Traits ◽  
Geographic Range ◽  
Range Size ◽  
Habitat Specialization ◽  
Mean Annual Precipitation ◽  
Mean Annual Temperature ◽  
Small Range ◽  
Extrinsic Factors

Abstract China is a country with one of the most species rich reptile faunas in the world. However, nearly a quarter of Chinese lizard species assessed by the China Biodiversity Red List are threatened. Nevertheless, to date, no study has explicitly examined the pattern and processes of extinction and threat in Chinese lizards. In this study, we conducted the first comparative phylogenetic analysis of extinction risk in Chinese lizards. We addressed the following three questions: 1) What is the pattern of extinction and threat in Chinese lizards? 2) Which species traits and extrinsic factors are related to their extinction risk? 3) How can we protect Chinese lizards based on our results? We collected data on ten species traits (body size, clutch size, geographic range size, activity time, reproductive mode, habitat specialization, habitat use, leg development, maximum elevation, and elevation range) and seven extrinsic factors (mean annual precipitation, mean annual temperature, mean annual solar insolation, normalized difference vegetation index (NDVI), human footprint, human population density, and human exploitation). After phylogenetic correction, these variables were used separately and in combination to assess their associations with extinction risk. We found that Chinese lizards with small geographic range, large body size, high habitat specialization, and living in high precipitation areas were vulnerable to extinction. Conservation priority should thus be given to species with the above extinction-prone traits so as to effectively protect Chinese lizards. Preventing future habitat destruction should also be a primary focus of management efforts because species with small range size and high habitat specialization are particularly vulnerable to habitat loss.

Empirical Estimation of Shortest Route Length along U.S. Interstate Highways Based on Great Circle Distance

2021 ◽  
pp. 036119812110152
Author(s):  
Nawei Liu ◽  
Fei Xie ◽  
Zhenhong Lin ◽  
Mingzhou Jin
Keyword(s):  
Linear Regression ◽  
State Level ◽  
Distance Matrix ◽  
Great Circle ◽  
The State ◽  
Empirical Estimation ◽  
Interstate Highways ◽  
Shortest Route ◽  
Route Length ◽  
Great Circle Distance

In this study, 98 regression models were specified for easily estimating shortest distances based on great circle distances along the U.S. interstate highways nationwide and for each of the continental 48 states. This allows transportation professionals to quickly generate distance, or even distance matrix, without expending significant efforts on complicated shortest path calculations. For simple usage by all professionals, all models are present in the simple linear regression form. Only one explanatory variable, the great circle distance, is considered to calculate the route distance. For each geographic scope (i.e., the national or one of the states), two different models were considered, with and without the intercept. Based on the adjusted R-squared, it was observed that models without intercepts generally have better fitness. All these models generally have good fitness with the linear regression relationship between the great circle distance and route distance. At the state level, significant variations in the slope coefficients between the state-level models were also observed. Furthermore, a preliminary analysis of the effect of highway density on this variation was conducted.

scholarly journals Geographic contingency, not species sorting, dominates macroevolutionary dynamics in an extinct clade of neogastropods (Volutospina; Volutidae)

Paleobiology ◽  
2021 ◽  
pp. 1-15
Author(s):  
Dana S. Friend ◽  
Brendan M. Anderson ◽  
Warren D. Allmon
Keyword(s):  
Middle Eocene ◽  
Ecological Factors ◽  
Geographic Range ◽  
Late Eocene ◽  
Range Size ◽  
Species Sorting ◽  
Extinction Rates ◽  
Geographic Range Size ◽  
Speciation Rates ◽  
Planktotrophic Larvae

Abstract Rates of speciation and extinction are often linked to many ecological factors, traits (emergent and nonemergent) such as environmental tolerance, body size, feeding type, and geographic range. Marine gastropods in particular have been used to examine the role of larval dispersal in speciation. However, relatively few studies have been conducted placing larval modes in species-level phylogenetic context. Those that have, have not incorporated fossil data, while landmark macroevolutionary studies on fossil clades have not considered both phylogenetic context and net speciation (speciation–extinction) rates. This study utilizes Eocene volutid Volutospina species from the U.S. Gulf Coastal Plain and the Hampshire Basin, U.K., to explore the relationships among larval mode, geographic range, and duration. Based on the phylogeny of these Volutospina, we calculated speciation and extinction rates in order to compare the macroevolutionary effects of larval mode. Species with planktotrophic larvae had a median duration of 9.7 Myr, which compared significantly to 4.7 Myr for those with non-planktotrophic larvae. Larval mode did not significantly factor into geographic-range size, but U.S. and U.K. species do differ, indicating a locality-specific component to maximum geographic-range size. Non-planktotrophs (NPTs)were absent among the Volutospina species during the Paleocene–early Eocene. The relative proportions of NPTs increased in the early middle Eocene, and the late Eocene was characterized by disappearance of planktotrophs (PTs). The pattern of observed lineage diversity shows an increasing preponderance of NPTs; however, this is clearly driven by a dramatic extinction of PTs, rather than higher NPT speciation rates during the late Eocene. This study adds nuance to paleontology's understanding of the macroevolutionary consequences of larval mode.

scholarly journals THE CULTURAL HERITAGE SPATIAL DATA SET OF KLAIPĖDA OLD TOWN / SAUGOMŲ KLAIPĖDOS SENAMIESČIO OBJEKTŲ ERDVINIŲ DUOMENŲ RINKINYS / НАБОР ПРОСТРАНСТВЕННЫХ ДАННЫХ ОХРАНЯЕМЫХ ОБЪЕКТОВ СТАРОГО ГОРОДА КЛАЙПЕДЫ

2012 ◽  
Vol 37 (4) ◽  
pp. 172-176
Author(s):  
Lina Kuklienė ◽  
Dainora Jankauskienė ◽  
Indrius Kuklys
Keyword(s):  
Cultural Heritage ◽  
Spatial Data ◽  
Road Construction ◽  
Heritage Management ◽  
Data Set ◽  
Management Planning ◽  
Cultural Heritage Management ◽  
Input Devices ◽  
Relevant Point ◽  
Cultural Heritage Objects

The purpose of the thesis is to analyze the main geodetic databases of Lithuania and to create a geodetic database of cultural heritage objects in Klaipėda using program ArcGIS 9.3. The problem is that the geodetic database storing graphical and attributive information about cultural heritage in Klaipeda city has not been created yet. Thus, in order to incorporate GIS technologies into the management of cultural heritage, starting the creation of such a database seems to be a relevant point. The fully completed and regularly updated geodetic database can be used for cultural heritage management, planning, design, road construction, etc. Therefore, the following objectives have been set: 1) describing geo-data collection and input devices; 2) stimulating the geodetic database that introduces information about buildings, building complexes, cemeteries, locations of archaeological and cultural heritage; 3) giving a detailed description of the database creation process; 4) analyzing the need for establishing a geodetic database of cultural heritage objects in Klaipėda. Santrauka Lietuvoje GIS pagrindu sukurta daug įvairiems tikslams skirtų georeferencinių bei teminių erdvinių duomenų rinkinių. Viena iš šių rinkinių panaudojimo sričių – valstybės registruose esančių duomenų kaupimas. Tokiu principu yra sukurta Kultūros vertybių registro duomenų bazė, kurios pagrindiniai duomenys buvo panaudoti kuriant Klaipėdos miesto kultūros paveldo objektų erdvinių duomenų rinkinį. Siekiant kuo operatyviau įtraukti GIS technologijas į kultūros paveldo objektų tvarkybą, aktualu Klaipėdoje pradėti kurti kultūros paveldo objektų erdvinių duomenų rinkinį. Nuolat atnaujinamas erdvinių duomenų rinkinys palengvins įvairių sričių specialistų atliekamus kultūros paveldo objektų administravimo, teritorijų planavimo, projektavimo, kelių tiesimo ir kitus darbus. Резюме В Литве на основе ГИС для различных целей создано множество гео-ссылок, а также тематических наборов пространственных данных. Область использования одного из множеств – сбор данных, имеющихся в государственном учете. По такому принципу создана регистрационная база культурных ценностей, основные данные которой были использованы при создании набора пространственных данных объектов культурного наследия города Клайпеды. С целью оперативно обеспечить управление объектами культурного наследия технологиями ГИС следует начать создание набора пространственных данных объектов культурного наследия в Клайпеде. Полностью заполненный и постоянно обновляемый набор пространственных данных облегчит работу специалистов в различных областях: администрировании объектов культурного наследия, планировании территорий, проектировании, строительстве дорог и других.

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