Association between AUTS2 haplotypes and alcohol dependence in a Japanese population

2016 ◽  
Vol 28 (4) ◽  
pp. 214-220 ◽  
Author(s):  
Shin Narita ◽  
Kenta Nagahori ◽  
Daisuke Nishizawa ◽  
Eiji Yoshihara ◽  
Atsuko Kawai ◽  
...  

ObjectiveRecent genome-wide analysis has indicated that the autism susceptibility candidate 2 (AUTS2) gene is involved in the regulation of alcohol consumption. We hypothesised that AUTS2 might be associated with the development of alcohol dependence. Therefore, in this exploratory study, we compared the genotype and allele frequencies of the polymorphisms rs6943555 and rs9886351 in the AUTS2 gene between patients with alcohol dependence and healthy control subjects living in a Japanese provincial prefecture. We also examined whether or not the haplotypes consisting of these polymorphisms are related to alcohol dependence.MethodsThe subjects of this study consisted of 64 patients with alcohol dependence and 75 unrelated healthy people. The AUTS2 genotypes were determined by the polymerase chain reaction (PCR)-restriction fragment length polymorphism (RFLP) method.ResultsNo significant differences in the genotype and allele frequencies of the polymorphisms AUTS2 rs6943555 and rs9886351 were found between alcohol dependence and control subjects. On the other hand, the frequencies of the AUTS2 haplotypes were significantly different between them, and the rs6943555 and rs9886351 A-A haplotype was associated with alcohol dependence (p=0.0187).ConclusionThis suggests that the rs6943555 and rs9886351 A-A haplotype might affect the vulnerability to alcohol dependence pathogenesis. Further studies are needed to confirm the reproducibility of the results of this study with increased numbers of subjects.

2013 ◽  
Vol 2013 ◽  
pp. 1-5 ◽  
Author(s):  
Xiao-li Liu ◽  
Jian-zong Du ◽  
Yu-miao Zhou ◽  
Qin-fen Shu ◽  
Ya-guo Li

Clinical and experimental data have demonstrated that inflammation plays fundamental roles in the pathogenesis of ischemic stroke. Interleukin-16 (IL-16) is identified as a proinflammatory cytokine that is a key element in the ischemic cascade after cerebral ischemia. We aimed to examine the relationship between theIL-16polymorphisms and the risk of ischemic stroke in a Chinese population. A total of 198 patients with ischemic stroke and 236 controls were genotyped using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and DNA sequencing method. We found that the rs11556218TG genotype and G allele ofIL-16were associated with significantly increased risks of ischemic stroke (TG versus TT, adjusted OR = 1.88; 95% CI, 1.15–3.07; G versus T, adjusted OR = 1.54; 95% CI, 1.05–2.27, resp.). However, there were no significant differences in the genotype and allele frequencies ofIL-16rs4778889 T/C and rs4072111 C/T polymorphisms between the two groups, even after stratification analyses by age, gender, and the presence or absence of hypertension, diabetes mellitus, hypercholesterolemia, and hypertriglyceridemia. These findings indicate that theIL-16polymorphism may be related to the etiology of ischemic stroke in the Chinese population.


2017 ◽  
Vol 15 (9) ◽  
pp. 609-626
Author(s):  
Luckhana PIMJAN ◽  
Chalermporn ONGVARRASOPONE ◽  
Wasun CHANTRATITA ◽  
Chumpol POLPRAMOOL ◽  
Pipat CHERDRUNGSI ◽  
...  

In order to excel in sport, apart from the correct training, the genetic combination of an individual may also be a factor in making an elite athlete. Weightlifting, as a popular sport, has a unique bio-mechanism dealing with muscle performance. The current study investigated the polymorphisms of the angiotensin-converting enzyme (ACE), the a-actinin-3 (ACTN3), and the vitamin D receptor (VDR) genes (individually or in combination) in Thai weightlifters. A total of 117 male and female national and junior Thai weightlifters, and 99 healthy sedentary people were recruited for this study. Genotyping was analyzed by Polymerase Chain Reaction (PCR) and Polymerase Chain Reaction - Restriction Fragment Length Polymorphism (PCR-RFLP). When compared to the junior and non-athletes group, the genotype and allele frequencies of ACE (DD), ACTN3 (RR), and VDR (ff) were more frequent in both male and female national weightlifters. In addition, the genotype combinations between ACE (DD) + VDR (ff), ACE (DD) + ACTN3 RR, and ACTN3 RR + VDR ff presented highly in both genders of national weightlifters. Taken together, our results suggest that the ACTN3 and VDR genotype, individually or in combination, may influence muscle performance in weightlifters, appearing to significantly contribute to better weightlifting performance.


2020 ◽  
Vol 33 (10) ◽  
pp. 1293-1297
Author(s):  
Maryam Soltani asl ◽  
Parviz Azimnasab-sorkhabi ◽  
Ali-Akbar Abolfathi ◽  
Yashar Hashemi aghdam

AbstractObjectivesDiabetes is a serious disease, and the number of affected individuals with diabetes is considerably high. The aim of this study is the identification of NeuroD1 Ala45Thr polymorphism and its association with type 1 diabetes susceptibility in Iranian people.MethodsClinical and biochemical characteristics for 146 people (76 diabetics and 70 nondiabetics) were measured, such as fasting blood sugar, triacylglycerol, total cholesterol, age, and weight in each individual. Polymerase chain reaction-restriction fragment length polymorphism technique (MwoI restriction-enzyme) was used for genotyping of the NeuroD1 Ala45Thr polymorphism.ResultsIn this study, the frequency of the A allele in diabetic patients in comparison with the healthy control group had a significantly higher percentage (p < 0.01), whereas diabetic patients had the AA genotype, approximately four times more than the healthy control group (p < 0.01). In addition, we observed that fasting blood sugar had a higher concentration in the AA genotype than in AG + GG genotypes (p < 0.01).ConclusionsThe A allele may be a risk factor for the expansion of type 1 diabetes in the Iranian population. However, the NeuroD1 Ala45Thr polymorphism and its role in type 1 diabetes in different populations are controversial.


2019 ◽  
Vol 34 (4) ◽  
Author(s):  
Palden Wangyel Dorji ◽  
Sonam Wangchuk ◽  
Kanyarat Boonprasert ◽  
Mayuri Tarasuk ◽  
Kesara Na-Bangchang

Abstract Background Marked differences among genotype frequencies (Caucasians, Asians, and Africans) have been observed in cytochrome P450 (CYP) genes. Data on the frequency of pharmacogenetic relevant polymorphisms in Bhutanese population is absent. This study aimed to investigate the frequencies of pharmacogenetic relevant polymorphisms of CYP2C9 (*2 and *3), CYP2C19 (*2 and *3), CYP2D6 (*10), and CYP3A5 (*3) in Bhutanese population. Methods Genotyping was performed in 443 DNA samples using polymerase chain reaction-restriction fragment length polymorphism. Results For CYP2C9, allele frequencies of *2 and *3 variants were 0.339% and 0%, respectively. For CYP2C19, frequencies of *2 and *3 variants were 30.135% and 15.689%, respectively. Allele frequencies of CYP2D6*10 and CYP3A5*3 were 21.332% and 77.314%, respectively. Allele frequencies of CYP2C9*2 are similar to most Asians while CYP2C9*3 was absent. CYP2C19*2 showed a close resemblance to Japanese and Burmese, while CYP2C19*3 is near to Japanese and Korean. CYP2D6*10 is noticeably lower than other Asians. CYP3A5*3 is similar to East Asians (Chinese, Japanese, and Korean). Conclusions The Bhutanese population is polymorphic for these CYP genes, except for CYP2C9*3. Similar to other populations, genetic testing for these genes may, therefore, be helpful to obtain the benefit from pharmacological treatments and prevent adverse drug reactions.


2018 ◽  
Vol 18 (1) ◽  
pp. 46-49 ◽  
Author(s):  
Dewi Karita ◽  
Ahmad Hamim Sadewa ◽  
Pramudji Hastuti

Background: Endothelin-1 plays a role as a vasoconstrictor and also inhibits the expression of adiponectin in obesity. The Lys198Asn polymorphism of the endothelin-1 gene will increase the level of endothelin-1 plasma and increase the risk factor of obesity. Objective: In this study, we investigated the relationship between Lys198Asn polymorphism of endothelin-1 gene and endothelin-1 plasma level among individuals with obesity in Javanese population. Method: This study was conducted on 61 obese subjects and 65 control subjects. All subjects were measured for anthropometrics and endothelin-1 plasma level by ELISA (Enzyme-linked Immune Sorbent Assay). The polymorphism of Lys198Asn of ET-1 (Endothelin-1) was screened by using PCRRFLP (Polymerase Chain Reaction- Restriction Fragment Length Polymorphism). Results: TT genotype was a risk factor of obesity (OR 5.344 CI=95% 1.77-16.16) compared with GG genotype. Levels of endothelin-1 plasma were higher in obese subjects than that of control subjects (p=0.013), with TT genotype having the highest endothelin-1 plasma level (p<0.001). Conclusion: The Lys198Asn polymorphism of endothelin-1 gene plays a role in increasing endothelin-1 plasma levels and is risk factors of obesity. Bangladesh Journal of Medical Science Vol.18(1) 2019 p.46-49


Author(s):  
Manal M Khadhim ◽  
Dhuha A Hassan

 Objective: The present study was carried out to estimate the possible role of Interleukin-4 (IL-4)RαQ576R genes polymorphism in the development of immune reaction against penicillin, as well as to study the effect of IL-4 cytokine in regulating allergic reactions.Materials and Methods: Measurement of serum IL-4 concentration was done using enzyme-linked immunosorbent assay technique; IL-4RαQ576R gene polymorphisms were genotyped using polymerase chain reaction-restriction fragment lengths polymorphisms. Comparisons for statistical significance were performed using Mann–Whitney U-test.Results: Comparing with control subjects, there was a significantly increased level of IL-4 (348.53 pg/ml) in penicillin allergic patients versus (284.72 pg/ml) in sera of control subjects. The IL-4RαQ576R alleles were significantly higher in the penicillin allergic individual compared with apparently healthy control subjects.Conclusions: Data study suggested that IL-4 cytokine have some important roles in penicillin hypersensitivity reaction, additionally the IL- 4RαQ576Rgene polymorphisms might involve in modulating of penicillin hypersensitivity. 


2015 ◽  
Vol 73 (4) ◽  
pp. 289-292 ◽  
Author(s):  
João Paulo Lopes Born ◽  
Bruna Priscila dos Santos ◽  
Rodrigo Secolin ◽  
Fernando Tenório Gameleira ◽  
Tiago Gomes de Andrade ◽  
...  

Juvenile myoclonic epilepsy (JME) accounts for 26% of generalized idiopathic epileptic syndromes. The highest levels of thrombin activity are closely involved in the development of neurological diseases, including epilepsy. The prothrombin c.20210G>A (rs1799963) variation, which alters prothrombin mRNA stability, is associated with high plasma prothrombin levels. Objective : The present study was designed to investigate whether the SNP rs1799963 is a risk factor for JME in the northeastern Brazilian population. Results : The polymorphism was genotyped in 207 controls and 123 patients using polymerase chain reaction-restriction fragment length polymorphism method. No significant differences were observed in the genotype and allele frequencies of this polymorphism between cases and controls. Conclusion : These results present no evidence for an association of rs1799963 with JME. Further studies including other types of epilepsy are required to investigate the involvement of prothrombin gene in the genetic susceptibility to chronic seizure.


2016 ◽  
Vol 2016 ◽  
pp. 1-6 ◽  
Author(s):  
Shufen Feng ◽  
Gang Ye ◽  
Shi Bai ◽  
Hongcheng Wei ◽  
Xueling Liao ◽  
...  

To investigate the association between the metalloproteinase-9 (MMP9) −1562C/T polymorphism and diabetic nephropathy (DN) in Han Chinese, the patients with type 2 diabetes were collected and divided into the non-DN (NDN) and DN groups; controls were recruited. Genotype and allele frequencies were assessed using polymerase chain reaction and restriction fragment length polymorphism. Results showed that SBP, DBP, HbA1c, UAER, Cr, BUN, TG, and TC were higher in the DN group compared with the control and NDN groups. SBP, HbA1c, and TC in DN patients with the TT and CT genotypes were lower than in those with CC. Compared with controls, the frequency of the T allele in the DN group was significantly lower. The MMP9 −1562C allele, SBP, Cr, BUN, TG, and TC were independent risk factors for DN. All of the above suggested that the MMP9 −1562C/T polymorphism was associated with DN in Han Chinese.


2014 ◽  
Vol 2014 ◽  
pp. 1-5 ◽  
Author(s):  
Mónica Escamilla-Tilch ◽  
Iris Estrada-García ◽  
Julio Granados ◽  
Roberto Arenas-Guzmán ◽  
Rosalio Ramos-Payan ◽  
...  

Background.Leprosy is a chronic infectious disease caused by the intracellular acid-fast bacilliMycobacterium leprae; it has been determined that genetic factors of the host play an important role in the disease susceptibility. Thus, in this case-control study, we evaluated the possible association between theIL-17A G-197A(rs227593) andIL-17F A7488G(His161Arg, rs763780) gene SNPs and susceptibility to leprosy disease in Mexican population.Methods.Seventy-five leprosy patients and sixty-nine control subjects were included. Both SNPs were genotyped with the polymerase chain reaction-restriction fragment length polymorphism technique.Results.We found nonsignificant differences in genotype and allele frequencies related toIL-17A G-197A(rs227593) andIL-17F A7488G(His161Arg, rs763780) gene SNPs in MB as well as subclinical forms of leprosy disease versus healthy individuals.Conclusions.Since the sample size is not large enough, it is difficult to sustain an association of susceptibility to leprosy with genotypes or allele frequencies ofIL-17A G-197A(rs227593) andIL-17F A7488G(His161Arg, rs763780), suggesting thatIL-17polymorphisms have no significant role in the genetic susceptibility to development of this disease in the Mexican Mestizo population.


Blood ◽  
2012 ◽  
Vol 120 (21) ◽  
pp. 4972-4972
Author(s):  
Atsushi Iwasaki ◽  
Takayuki Saitoh ◽  
Chiaki Ushie ◽  
Norihiko Moriyama ◽  
Tomonori Takani ◽  
...  

Abstract Abstract 4972 Background: The growth of plasma cells in multiple myeloma (MM) is dependent on a complex interplay among various cytokines, adhesion molecules and other factors in the tumor microenvironment. Several cytokines, including Interleukin (IL)-6, IL-10 and IL-17 have been shown to promote myeloma cell growth in vitro. Furthermore, several investigators have shown the increase in levels of serum IL-6, IL-10, IL-17, and IL-18 in MM patients compared with healthy donors. Although many studies have shown that the dysregulation of these cytokines can be associated with MM development, there are a few reports showing the influence of polymorphisms in cytokine genes on the risk of MM. We examined the single nucleotide polymorphisms (SNPs) of these cytokines: IL-10 (rs1800870 − 1082 A/G, rs1800871 − 819 T/C, and rs1800872 − 592 A/C), IL-17A (rs2275913, −197G/A), IL-17F (rs763780, 7488 T/C), and IL-18(rs187238 −137G/C and rs1946518 −607 A/C) in MM patients, and analyzed the relationship between these SNPs and the susceptibility and clinical features. Patients and Methods: Ninety three patients [age range, 35–83 years; male/female 44/49; Durie and Salmon stage I (n=8), stage II (n=22), stage III (n=61), unknown (n=2); International staging system (ISS) 1 (n=21), 2 (n=21), 3 (n=29), unknown (n=22); IgG (n=55), IgA (n=15), IgD (n=2), non-secretory(n=3), Bence Jones(n=18)] with MM and 192 healthy race- and sex-matched healthy controls were examined. Genomic DNA was isolated from peripheral blood using the DNA extraction Kit. Genotyping of IL-10, IL-17A, and IL-17F polymorphisms were determined by the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and the genotyping of the IL-18 polymorphism was determined by the allelic specific polymerase chain reaction technique. Genotype and allele frequencies were compared between the study groups using Χ2-test. The characteristics and laboratory features of MM patients with each polymorphisms were compared using Χ2-tests and student t-tests. The Kaplan-Meier method was used in the calculation of overall survival (OS). OS were compared with the log-rank test. Probability values <0. 05 were considered statistically significant. Results: Genotype and allele frequencies of cytokines in MM patients and the control: The frequencies of genotypes of cytokines in patients with MM were as follows: AA 92. 5% and AG 7. 5% for IL-10–1082; TT 43%, TC 48. 4% and CC 8. 6% for IL-10–819; AA 43%, AC 48. 4% and CC 8. 6% for IL-10–592; AA 19. 4%, AG 40. 9% and GG 39. 8% for IL-17A-197; TT 82. 8% and TC 17. 2% for IL-17F; GG 65. 6%, GC 26. 9% and CC 7. 5% for IL-18–137; AA 35. 5%, AC 47. 3% and CC 17. 2% for IL-18–607 loci. No significant differences were observed in the allele or genotype frequencies of IL-10 and IL-17F polymorphisms between MM patients and the control group. However, patients with MM had a significantly higher frequency of the IL-18–137 CC genotype compared to the control group (7. 5% vs. 2. 2%, P<0. 05). The number of IL-18–137 C alleles among the patients with MM was also higher than in the control group (21% vs. 13. 3%, p<0. 05). Furthermore, MM patients had a significantly lower frequency of the IL-17A A/G genotype compared to the control group (40. 9% vs. 58. 7%, P<0. 01). Patients' characteristics according to cytokine polymorphisms: IL-10 592 CC genotype (high producer type) was significantly associated with advanced ISS (P=0. 03) and higher β2 microglobulin level (CC vs non CC; 9. 81±4. 78 g/dL vs. 5. 27±3. 27g/dL, p<0. 05). IL-17A-197 AA genotype (high producer type) was also significantly associated with higher bone scale (66. 6% vs 44%, p=0. 05). IL-18–137 CC or GC genotype was significantly associated with advanced ISS (P<0. 05) and lower hemoglobin level (8. 8±2. 6 mg/dL vs. 9. 9±2. 4 mg/dL, p=0. 04). Although there was no significant difference in overall survival of IL17 A, IL-17F and IL-18 polymorphisms, patients with IL-10–592 CC or IL-18–607 AA genotype showedtendency to more unfavorable survival (p=0. 07). A multivariate analysis using cox proportional hazard model demonstrated that Bence Jones protein (p=0. 001), ISS stage III (p<0. 05), the use of new drugs (p=0. 001), IL-10–592CC genotype (P=0. 005) and IL-17 AA (P=0. 00001) were independent adverse prognostic factors. Conclusion: These results indicate that cytokine polymorphisms, including IL-10, IL-17 and IL-18, are associated with prevalence and clinical feature of MM in Japanese patients. Disclosures: No relevant conflicts of interest to declare.


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