Detection of interactions between nucleosome arrays mediated by specific core histone tail domains

Methods ◽  
2007 ◽  
Vol 41 (3) ◽  
pp. 278-285 ◽  
Author(s):  
P KAN ◽  
J HAYES
2007 ◽  
Vol 28 (1) ◽  
pp. 227-236 ◽  
Author(s):  
Xiaodong Wang ◽  
Jeffrey J. Hayes

ABSTRACT Nucleosome arrays undergo salt-dependent self-association into large oligomers in a process thought to recapitulate essential aspects of higher-order tertiary chromatin structure formation. Lysine acetylation within the core histone tail domains inhibits self-association, an effect likely related to its role in facilitating transcription. As acetylation of specific tail domains may encode distinct functions, we investigated biochemical and self-association properties of model nucleosome arrays containing combinations of native and mutant core histones with lysine-to-glutamine substitutions to mimic acetylation. Acetylation mimics within the tail domains of H2B and H4 caused the largest inhibition of array self-association, while modification of the H3 tail uniquely affected the stability of DNA wrapping within individual nucleosomes. In addition, the effect of acetylation mimics on array self-association is inconsistent with a simple charge neutralization mechanism. For example, acetylation mimics within the H2A tail can have either a positive or negative effect on self-association, dependent upon the acetylation state of the other tails and nucleosomal repeat length. Finally, we demonstrate that glutamine substitutions and lysine acetylation within the H4 tail domain have identical effects on nucleosome array self-association. Our results indicate that acetylation of specific tail domains plays distinct roles in the regulation of chromatin structure.


2001 ◽  
Vol 98 (12) ◽  
pp. 6599-6604 ◽  
Author(s):  
D. Angelov ◽  
J. M. Vitolo ◽  
V. Mutskov ◽  
S. Dimitrov ◽  
J. J. Hayes

2006 ◽  
Vol 84 (4) ◽  
pp. 578-588 ◽  
Author(s):  
Xiaodong Wang ◽  
Jeffrey J. Hayes

The core histone tail domains are key regulatory elements in chromatin. The tails are essential for folding oligonucleosomal arrays into both secondary and tertiary structures, and post-translational modifications within these domains can directly alter DNA accessibility. Unfortunately, there is little understanding of the structures and interactions of the core histone tail domains or how post-translational modifications within the tails may alter these interactions. Here we review NMR, thermal denaturation, cross-linking, and other selected solution methods used to define the general structures and binding behavior of the tail domains in various chromatin environments. All of these methods indicate that the tail domains bind primarily electrostatically to sites within chromatin. The data also indicate that the tails adopt specific structures when bound to DNA and that tail structures and interactions are plastic, depending on the specific chromatin environment. In addition, post-translational modifications, such as acetylation, can directly alter histone tail structures and interactions.


Chromosoma ◽  
2013 ◽  
Vol 123 (1-2) ◽  
pp. 3-13 ◽  
Author(s):  
Sharon Pepenella ◽  
Kevin J. Murphy ◽  
Jeffrey J. Hayes

2007 ◽  
Vol 21 (5) ◽  
Author(s):  
Jeffrey Hayes ◽  
Pu‐Yeh Kan ◽  
Xiaodong Wang ◽  
Xu Lu ◽  
Jeffrey Hansen

Biopolymers ◽  
2003 ◽  
Vol 68 (4) ◽  
pp. 539-546 ◽  
Author(s):  
Chunyang Zheng ◽  
Jeffrey J. Hayes

2007 ◽  
Vol 27 (6) ◽  
pp. 2084-2091 ◽  
Author(s):  
Pu-Yeh Kan ◽  
Xu Lu ◽  
Jeffrey C. Hansen ◽  
Jeffrey J. Hayes

ABSTRACT The core histone tail domains play a central role in chromatin structure and epigenetic processes controlling gene expression. Although little is known regarding the molecular details of tail interactions, it is likely that they participate in both short-range and long-range interactions between nucleosomes. Previously, we demonstrated that the H3 tail domain participates in internucleosome interactions during MgCl2-dependent condensation of model nucleosome arrays. However, these studies did not distinguish whether these internucleosome interactions represented short-range intra-array or longer-range interarray interactions. To better understand the complex interactions of the H3 tail domain during chromatin condensation, we have developed a new site-directed cross-linking method to identify and quantify interarray interactions mediated by histone tail domains. Interarray cross-linking was undetectable under salt conditions that induced only local folding, but was detected concomitant with salt-dependent interarray oligomerization at higher MgCl2 concentrations. Interestingly, lysine-to-glutamine mutations in the H3 tail domain to mimic acetylation resulted in little or no reduction in interarray cross-linking. In contrast, binding of a linker histone caused a much greater enhancement of interarray interactions for unmodified H3 tails compared to “acetylated” H3 tails. Collectively these results indicate that H3 tail domain performs multiple functions during chromatin condensation via distinct molecular interactions that can be differentially regulated by acetylation or binding of linker histones.


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