Physical mapping of 5S and 45S rDNA genes and ploidy levels of Iranian Asparagus species

2016 ◽  
Vol 211 ◽  
pp. 269-276 ◽  
Author(s):  
Seyyed Javad Mousavizadeh ◽  
Mohammad Reza Hassandokht ◽  
Abdolkarim Kashi ◽  
Juan Gil ◽  
Adoracion Cabrera ◽  
...  
Caryologia ◽  
2017 ◽  
Vol 71 (1) ◽  
pp. 1-6
Author(s):  
Hugo Abelardo Arroyo-Martínez ◽  
Amaury Martín Arzate-Fernández ◽  
Rodrigo Barba-González ◽  
José Luis Piña-Escutia

Hereditas ◽  
2002 ◽  
Vol 137 (1) ◽  
pp. 16-19 ◽  
Author(s):  
Y. H. HAN1 ◽  
L. J. LI1 ◽  
Y. C. SONG1 ◽  
Z. Y. LI1 ◽  
Z. Y. XIONG1 ◽  
...  

2016 ◽  
Vol 39 (2) ◽  
pp. 613-620 ◽  
Author(s):  
Juliana P. Castro ◽  
Enoque Medeiros-Neto ◽  
Gustavo Souza ◽  
Lânia I. F. Alves ◽  
Fabiane R. C. Batista ◽  
...  

Genetica ◽  
2006 ◽  
Vol 130 (2) ◽  
pp. 133-138 ◽  
Author(s):  
Rafael Bueno Noleto ◽  
Marcelo Ricardo Vicari ◽  
Roger Raupp Cipriano ◽  
Roberto Ferreira Artoni ◽  
Marta Margarete Cestari

Genetics ◽  
2003 ◽  
Vol 163 (4) ◽  
pp. 1299-1313
Author(s):  
Zheng Xu ◽  
Britton Lance ◽  
Claudia Vargas ◽  
Budak Arpinar ◽  
Suchendra Bhandarkar ◽  
...  

Abstract A bioinformatics tool called ODS3 has been created for mapping by sequencing. The tool allows the creation of integrated genomic maps from genetic, physical mapping, and sequencing data and permits an integrated genome map to be stored, retrieved, viewed, and queried in a stand-alone capacity, in a client/server relationship with the Fungal Genome Database (FGDB), and as a web-browsing tool for the FGDB. In that ODS3 is programmed in Java, the tool promotes platform independence and supports export of integrated genome-mapping data in the extensible markup language (XML) for data interchange with other genome information systems. The tool ODS3 is used to create an initial integrated genome map of the AIDS-related fungal pathogen, Pneumocystis carinii. Contig dynamics would indicate that this physical map is ∼50% complete with ∼200 contigs. A total of 10 putative multigene families were found. Two of these putative families were previously characterized in P. carinii, namely the major surface glycoproteins (MSGs) and HSP70 proteins; three of these putative families (not previously characterized in P. carinii) were found to be similar to families encoding the HSP60 in Schizosaccharomyces pombe, the heat-shock Ψ protein in S. pombe, and the RNA synthetase family (i.e., MES1) in Saccharomyces cerevisiae. Physical mapping data are consistent with the 16S, 5.8S, and 26S rDNA genes being single copy in P. carinii. No other fungus outside this genus is known to have the rDNA genes in single copy.


2016 ◽  
Vol 88 (3) ◽  
pp. 411-424 ◽  
Author(s):  
Veronika Pavlištová ◽  
Martina Dvořáčková ◽  
Michal Jež ◽  
Iva Mozgová ◽  
Petr Mokroš ◽  
...  

Genome ◽  
2001 ◽  
Vol 44 (5) ◽  
pp. 911-918 ◽  
Author(s):  
Ki-Byung Lim ◽  
Jannie Wennekes ◽  
J Hans de Jong ◽  
Evert Jacobsen ◽  
Jaap M van Tuyl

Detailed karyotypes of Lilium longiflorum and L. rubellum were constructed on the basis of chromosome arm lengths, C-banding, AgNO3 staining, and PI-DAPI banding, together with fluorescence in situ hybridisation (FISH) with the 5S and 45S rDNA sequences as probes. The C-banding patterns that were obtained with the standard BSG technique revealed only few minor bands on heterologous positions of the L. longiflorum and L. rubellum chromosomes. FISH of the 5S and 45S rDNA probes on L. longiflorum metaphase complements showed overlapping signals at proximal positions of the short arms of chromosomes 4 and 7, a single 5S rDNA signal on the secondary constriction of chromosome 3, and one 45S rDNA signal adjacent to the 5S rDNA signal on the subdistal part of the long arm of chromosome 3. In L. rubellum, we observed co-localisation of the 5S and 45S rDNA sequences on the short arm of chromosomes 2 and 4 and on the long arms of chromosomes 2 and 3, and two adjacent bands on chromosome 12. Silver staining (Ag-NOR) of the nucleoli and NORs in L. longiflorum and L. rubellum yielded a highly variable number of signals in interphase nuclei and only a few faint silver deposits on the NORs of mitotic metaphase chromosomes. In preparations stained with PI and DAPI, we observed both red- and blue-fluorescing bands at different positions on the L. longiflorum and L. rubellum chromosomes. The red-fluorescing or so-called reverse PI-DAPI bands always coincided with rDNA sites, whereas the blue-fluorescing DAPI bands corresponded to C-bands. Based on these techniques, we could identify most of chromosomes of the L. longiflorum and L. rubellum karyotypes.Key words: fluorescence in situ hybridisation, FISH, 5S rDNA, 45S rDNA, C-banding, reverse PI-DAPI banding.


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