Insight into molecular interactions between constituents in polymer clay nanocomposites

Polymer ◽  
2006 ◽  
Vol 47 (14) ◽  
pp. 5196-5205 ◽  
Author(s):  
Debashis Sikdar ◽  
Dinesh R. Katti ◽  
Kalpana S. Katti ◽  
Rahul Bhowmik
2017 ◽  
Vol 45 (3) ◽  
pp. 741-750 ◽  
Author(s):  
Sjoerd J. van Deventer ◽  
Vera-Marie E. Dunlock ◽  
Annemiek B. van Spriel

To facilitate the myriad of different (signaling) processes that take place at the plasma membrane, cells depend on a high degree of membrane protein organization. Important mediators of this organization are tetraspanin proteins. Tetraspanins interact laterally among themselves and with partner proteins to control the spatial organization of membrane proteins in large networks called the tetraspanin web. The molecular interactions underlying the formation of the tetraspanin web were hitherto mainly described based on their resistance to different detergents, a classification which does not necessarily correlate with functionality in the living cell. To look at these interactions from a more physiological point of view, this review discusses tetraspanin interactions based on their function in the tetraspanin web: (1) intramolecular interactions supporting tetraspanin structure, (2) tetraspanin–tetraspanin interactions supporting web formation, (3) tetraspanin–partner interactions adding functional partners to the web and (4) cytosolic tetraspanin interactions regulating intracellular signaling. The recent publication of the first full-length tetraspanin crystal structure sheds new light on both the intra- and intermolecular tetraspanin interactions that shape the tetraspanin web. Furthermore, recent molecular dynamic modeling studies indicate that the binding strength between tetraspanins and between tetraspanins and their partners is the complex sum of both promiscuous and specific interactions. A deeper insight into this complex mixture of interactions is essential to our fundamental understanding of the tetraspanin web and its dynamics which constitute a basic building block of the cell surface.


Amino Acids ◽  
2013 ◽  
Vol 45 (4) ◽  
pp. 755-777 ◽  
Author(s):  
Deepak Ekka ◽  
Mahendra Nath Roy

2011 ◽  
Vol 115 (42) ◽  
pp. 12306-12314 ◽  
Author(s):  
Yang Shu ◽  
Menglin Liu ◽  
Shuai Chen ◽  
Xuwei Chen ◽  
Jianhua Wang

2008 ◽  
Vol 46 (21) ◽  
pp. 2380-2394 ◽  
Author(s):  
Guohu Guan ◽  
Chuncheng Li ◽  
Xuepei Yuan ◽  
Yaonan Xiao ◽  
Xiaoqing Liu ◽  
...  

Author(s):  
Sudharsan Bharath ◽  
R. Prem Kumar

Understanding the structure/property relations in polymer/clay nanocomposites is of great importance in designing materials with desired properties. Along these lines, a critical overview is attempted on the physical and molecular origins of material properties enhancements in polymer/clay hybrid nanocomposites. A comparative discussion of mechanical, thermal, optical, and ammability properties across various polymers focuses on those properties that are universally improved. In general, such properties originate from the nature of the layered inorganic fillers and from their nano-dispersion in a polymer. In contrast, other properties are determined by the particular/distinctive interactions between a specific polymer with the filler; such attributes can not be transfered from one polymer system to another. We shall try to distinguish between these two classes of properties, and provide some insight into which properties can be improved concurrently across a wide range of polymers.


2020 ◽  
Vol 11 (31) ◽  
pp. 8273-8287 ◽  
Author(s):  
Luciana M. Oliveira ◽  
Adam S. Long ◽  
Tom Brown ◽  
Keith R. Fox ◽  
Gerald Weber

A comprehensive experimental and theoretical evaluation of all DNA mismatch contexts, providing an insight into the intra-molecular interactions.


2012 ◽  
Vol 45 (4) ◽  
pp. 427-491 ◽  
Author(s):  
Pengyu Ren ◽  
Jaehun Chun ◽  
Dennis G. Thomas ◽  
Michael J. Schnieders ◽  
Marcelo Marucho ◽  
...  

AbstractAn understanding of molecular interactions is essential for insight into biological systems at the molecular scale. Among the various components of molecular interactions, electrostatics are of special importance because of their long-range nature and their influence on polar or charged molecules, including water, aqueous ions, proteins, nucleic acids, carbohydrates, and membrane lipids. In particular, robust models of electrostatic interactions are essential for understanding the solvation properties of biomolecules and the effects of solvation upon biomolecular folding, binding, enzyme catalysis, and dynamics. Electrostatics, therefore, are of central importance to understanding biomolecular structure and modeling interactions within and among biological molecules. This review discusses the solvation of biomolecules with a computational biophysics view toward describing the phenomenon. While our main focus lies on the computational aspect of the models, we provide an overview of the basic elements of biomolecular solvation (e.g. solvent structure, polarization, ion binding, and non-polar behavior) in order to provide a background to understand the different types of solvation models.


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