scholarly journals Small-RNA-Mediated Genome-wide trans -Recognition Network in Tetrahymena DNA Elimination

2015 ◽  
Vol 59 (2) ◽  
pp. 229-242 ◽  
Author(s):  
Tomoko Noto ◽  
Kensuke Kataoka ◽  
Jan H. Suhren ◽  
Azusa Hayashi ◽  
Katrina J. Woolcock ◽  
...  
Keyword(s):  
Small Rna ◽  
Dna Elimination ◽  
Genome Wide

scholarly journals Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and Nodules

2009 ◽  
Vol 21 (9) ◽  
pp. 2780-2796 ◽  
Author(s):  
Christine Lelandais-Brière ◽  
Loreto Naya ◽  
Erika Sallet ◽  
Fanny Calenge ◽  
Florian Frugier ◽  
...  
Keyword(s):  
Medicago Truncatula ◽  
Small Rna ◽  
Rna Analysis ◽  
Genome Wide

scholarly journals Genome-wide characterization of DNA methylation, small RNA expression, and histone H3 lysine nine di-methylation in Brassica rapa L.

DNA Research ◽  
2018 ◽  
Vol 25 (5) ◽  
pp. 511-520 ◽  
Author(s):  
Satoshi Takahashi ◽  
Kenji Osabe ◽  
Naoki Fukushima ◽  
Shohei Takuno ◽  
Naomi Miyaji ◽  
...  
Keyword(s):  
Dna Methylation ◽  
Brassica Rapa ◽  
Small Rna ◽  
Histone H3 ◽  
Rna Expression ◽  
Genome Wide

Genome-wide identification of MITE-derived microRNAs and their targets in bread wheat

2021 ◽  
Author(s):  
Juan Manuel Crescente ◽  
Diego Zavallo ◽  
Mariana del Vas ◽  
Sebastian Asurmendi ◽  
Marcelo Helguera ◽  
...  
Keyword(s):  
Gene Expression ◽  
Triticum Aestivum ◽  
Transposable Elements ◽  
Small Rna ◽  
Translational Repression ◽  
High Homology ◽  
Genome Wide ◽  
Target Sites ◽  
The Common ◽  
Non Coding Rnas

Abstract Plant microRNAs (miRNAs) are a class of small non-coding RNAs that are 20–24 nucleotides length and can repress gene expression at post-transcriptional levels by target degradation or translational repression. There is increasing evidence that some microRNAs can be derived from a group of non-autonomous class II transposable elements called Miniature Inverted-repeat Transposable Elements (MITEs) in plants. We used public small RNA, degradome libraries and the common wheat (Triticum aestivum) genome to screen miRNAs production and target sites. We also created a comprehensive wheat MITE database using known and identifying novel elements. We found high homology between MITEs and 14% of all the miRNAs production sites in wheat. Furthermore, we show that MITE-derived miRNAs have preference for target degradation sites with MITE insertions in 3' UTR regions in wheat.

Genome-wide mRNA and small RNA transcriptome profiles uncover cultivar- and tissue-specific changes induced by cadmium in Brassica parachinensis

2020 ◽  
Vol 180 ◽  
pp. 104207
Author(s):  
Yang Liu ◽  
Shuai Liu ◽  
Yanwu Deng ◽  
Chenjiang You ◽  
Weixin Zhang ◽  
...  
Keyword(s):  
Small Rna ◽  
Tissue Specific ◽  
Genome Wide

scholarly journals Small RNA-Mediated trans-Nuclear and trans-Element Communications in Tetrahymena DNA Elimination

2018 ◽  
Vol 28 (12) ◽  
pp. 1938-1949.e5 ◽  
Author(s):  
Tomoko Noto ◽  
Kazufumi Mochizuki
Keyword(s):  
Small Rna ◽  
Dna Elimination

scholarly journals Genome-Wide Transcript and Small RNA Profiling Reveals Transcriptomic Responses to Heat Stress

2019 ◽  
Vol 181 (2) ◽  
pp. 609-629 ◽  
Author(s):  
Juan He ◽  
Zengming Jiang ◽  
Lei Gao ◽  
Chenjiang You ◽  
Xuan Ma ◽  
...  
Keyword(s):  
Heat Stress ◽  
Small Rna ◽  
Rna Profiling ◽  
Genome Wide ◽  
Transcriptomic Responses

scholarly journals Genome wide identification of microRNAs involved in fatty acid and lipid metabolism of Brassica napus by small RNA and degradome sequencing

Gene ◽  
2017 ◽  
Vol 619 ◽  
pp. 61-70 ◽  
Author(s):  
Zhiwei Wang ◽  
Yan Qiao ◽  
Jingjing Zhang ◽  
Wenhui Shi ◽  
Jinwen Zhang
Keyword(s):  
Fatty Acid ◽  
Lipid Metabolism ◽  
Brassica Napus ◽  
Small Rna ◽  
Degradome Sequencing ◽  
Genome Wide

scholarly journals In silico genome wide mining of conserved and novel miRNAs in the brain and pineal gland of Danio rerio using small RNA sequencing data

Genomics Data ◽  
2016 ◽  
Vol 7 ◽  
pp. 46-53 ◽  
Author(s):  
Suyash Agarwal ◽  
Naresh Sahebrao Nagpure ◽  
Prachi Srivastava ◽  
Basdeo Kushwaha ◽  
Ravindra Kumar ◽  
...  
Keyword(s):  
Pineal Gland ◽  
Rna Sequencing ◽  
Danio Rerio ◽  
Small Rna ◽  
In Silico ◽  
Small Rna Sequencing ◽  
Sequencing Data ◽  
Genome Wide ◽  
The Brain
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