scholarly journals A Bridging Model for Persistence of a Polycomb Group Protein Complex through DNA Replication In Vitro

2012 ◽  
Vol 46 (6) ◽  
pp. 784-796 ◽  
Author(s):  
Stanley M. Lo ◽  
Nicole E. Follmer ◽  
Bettina M. Lengsfeld ◽  
Egbert V. Madamba ◽  
Samuel Seong ◽  
...  
Keyword(s):  
Dna Replication ◽  
Protein Complex ◽  
Polycomb Group ◽  
Polycomb Group Protein ◽  
Bridging Model ◽  
Group Protein

scholarly journals The iab-7 Polycomb Response Element Maps to a Nucleosome-Free Region of Chromatin and Requires Both GAGA and Pleiohomeotic for Silencing Activity

2001 ◽  
Vol 21 (4) ◽  
pp. 1311-1318 ◽  
Author(s):  
Rakesh K. Mishra ◽  
Jozsef Mihaly ◽  
Stéphane Barges ◽  
Annick Spierer ◽  
François Karch ◽  
...  
Keyword(s):  
Binding Sites ◽  
Polycomb Group ◽  
Polycomb Group Protein ◽  
Gaga Factor ◽  
Response Element ◽  
Polycomb Response Element ◽  
Free Region ◽  
Group Protein

ABSTRACT In the work reported here we have undertaken a functional dissection of a Polycomb response element (PRE) from the iab-7 cis-regulatory domain of the Drosophila melanogasterbithorax complex (BX-C). Previous studies mapped the iab-7PRE to an 860-bp fragment located just distal to the Fab-7boundary. Located within this fragment is an ∼230-bp chromatin-specific nuclease-hypersensitive region called HS3. We have shown that HS3 is capable of functioning as a Polycomb-dependent silencer in vivo, inducing pairing-dependent silencing of amini-white reporter. The HS3 sequence contains consensus binding sites for the GAGA factor, a protein implicated in the formation of nucleosome-free regions of chromatin, and Pleiohomeotic (Pho), a Polycomb group protein that is related to the mammalian transcription factor YY1. We show that GAGA and Pho interact with these sequences in vitro and that the consensus binding sites for the two proteins are critical for the silencing activity of theiab-7 PRE in vivo.

scholarly journals pipsqueak Encodes a Factor Essential for Sequence-Specific Targeting of a Polycomb Group Protein Complex

2002 ◽  
Vol 22 (17) ◽  
pp. 6261-6271 ◽  
Author(s):  
Der-Hwa Huang ◽  
Yuh-Long Chang ◽  
Chih-Chao Yang ◽  
I-Ching Pan ◽  
Balas King
Keyword(s):  
Protein Complex ◽  
Specific Binding ◽  
Binding Activity ◽  
Polycomb Group ◽  
Homeotic Genes ◽  
Polycomb Group Protein ◽  
Gaga Factor ◽  
Dna Binding Activity ◽  
Group Protein ◽  
Functional Relevance

ABSTRACT The Polycomb (Pc) group (Pc-G) of repressors is essential for transcriptional silencing of homeotic genes that determine the axial development of metazoan animals. It is generally believed that the multimeric complexes formed by these proteins nucleate certain chromatin structures to silence promoter activity upon binding to Pc-G response elements (PRE). Little is known, however, about the molecular mechanism involved in sequence-specific binding of these complexes. Here, we show that an immunoaffinity-purified Pc protein complex contains a DNA binding activity specific to the (GA) n motif in a PRE from the bithoraxoid region. We found that this activity can be attributed primarily to the large protein isoform encoded by pipsqueak (psq) instead of to the well-characterized GAGA factor. The functional relevance of psq to the silencing mechanism is strongly supported by its synergistic interactions with a subset of Pc-G that cause misexpression of homeotic genes.

The Drosophila Polycomb Group proteins ESC and E(Z) bind directly to each other and co-localize at multiple chromosomal sites

Development ◽  
1998 ◽  
Vol 125 (17) ◽  
pp. 3483-3496 ◽  
Author(s):  
F. Tie ◽  
T. Furuyama ◽  
P.J. Harte
Keyword(s):  
Polycomb Group ◽  
Homeotic Genes ◽  
Polycomb Group Proteins ◽  
Polycomb Group Protein ◽  
Polycomb Group Genes ◽  
Evolutionarily Conserved ◽  
Group Protein ◽  
Essential Prerequisite

The Polycomb Group gene esc encodes an evolutionarily conserved protein required for transcriptional silencing of the homeotic genes. Unlike other Polycomb Group genes, esc is expressed and apparently required only during early embryogenesis, suggesting it is required for the initial establishment of silencing but not for its subsequent maintenance. We present evidence that the ESC protein interacts directly with E(Z), another Polycomb Group protein required for silencing of the homeotic genes. We show that the most highly conserved region of ESC, containing seven WD motifs that are predicted to fold into a beta-propeller structure, mediate its binding to a conserved N-terminal region of E(Z). Mutations in the WD region that perturb ESC silencing function in vivo also perturb binding to E(Z) in vitro. The entire WD region forms a trypsin-resistant structure, like known beta -propeller domains, and mutations that would affect the predicted ESC beta-propeller perturb its trypsin-resistance, while a putative structure-conserving mutation does not. We show by co-immunoprecipitation that ESC and E(Z) are directly associated in vivo and that they also co-localize at many chromosomal binding sites. Since E(Z) is required for binding of other Polycomb Group proteins to chromosomes, these results suggest that formation of an E(Z):ESC complex at Polycomb Response Elements may be an essential prerequisite for the establishment of silencing.

scholarly journals RING1 is associated with the polycomb group protein complex and acts as a transcriptional repressor.

1997 ◽  
Vol 17 (7) ◽  
pp. 4105-4113 ◽  
Author(s):  
D P Satijn ◽  
M J Gunster ◽  
J van der Vlag ◽  
K M Hamer ◽  
W Schul ◽  
...  
Keyword(s):  
Protein Complex ◽  
Transcriptional Repressor ◽  
Ring Finger ◽  
Polycomb Group ◽  
Gene Activity ◽  
Polycomb Group Protein ◽  
Human Osteosarcoma Cells ◽  
Group Protein ◽  
Nuclear Domains ◽  
Zinc Binding Domain

The Polycomb (Pc) protein is a component of a multimeric, chromatin-associated Polycomb group (PcG) protein complex, which is involved in stable repression of gene activity. The identities of components of the PcG protein complex are largely unknown. In a two-hybrid screen with a vertebrate Pc homolog as a target, we identify the human RING1 protein as interacting with Pc. RING1 is a protein that contains the RING finger motif, a specific zinc-binding domain, which is found in many regulatory proteins. So far, the function of the RING1 protein has remained enigmatic. Here, we show that RING1 coimmunoprecipitates with a human Pc homolog, the vertebrate PcG protein BMI1, and HPH1, a human homolog of the PcG protein Polyhomeotic (Ph). Also, RING1 colocalizes with these vertebrate PcG proteins in nuclear domains of SW480 human colorectal adenocarcinoma and Saos-2 human osteosarcoma cells. Finally, we show that RING1, like Pc, is able to repress gene activity when targeted to a reporter gene. Our findings indicate that RING1 is associated with the human PcG protein complex and that RING1, like PcG proteins, can act as a transcriptional repressor.

scholarly journals SUMOylation of the polycomb group protein L3MBTL2 facilitates repression of its target genes

2013 ◽  
Vol 42 (5) ◽  
pp. 3044-3058 ◽  
Author(s):  
Christina Stielow ◽  
Bastian Stielow ◽  
Florian Finkernagel ◽  
Maren Scharfe ◽  
Michael Jarek ◽  
...  
Keyword(s):  
Transcriptional Repression ◽  
Target Genes ◽  
Polycomb Group ◽  
Hek293 Cells ◽  
Polycomb Group Protein ◽  
Wild Type ◽  
C Terminus ◽  
Lysine Residues ◽  
Group Protein

Abstract Lethal(3) malignant brain tumour like 2 (L3MBTL2) is an integral component of the polycomb repressive complex 1.6 (PRC1.6) and has been implicated in transcriptional repression and chromatin compaction. Here, we show that L3MBTL2 is modified by SUMO2/3 at lysine residues 675 and 700 close to the C-terminus. SUMOylation of L3MBTL2 neither affected its repressive activity in reporter gene assays nor it’s binding to histone tails in vitro. In order to analyse whether SUMOylation affects binding of L3MBTL2 to chromatin, we performed ChIP-Seq analysis with chromatin of wild-type HEK293 cells and with chromatin of HEK293 cells stably expressing either FLAG-tagged SUMOylation-competent or SUMOylation-defective L3MBTL2. Wild-type FLAG-L3MBTL2 and the SUMOylation-defective FLAG-L3MBTL2 K675/700R mutant essentially occupied the same sites as endogenous L3MBTL2 suggesting that SUMOylation of L3MBTL2 does not affect chromatin binding. However, a subset of L3MBTL2-target genes, particularly those with low L3MBTL2 occupancy including pro-inflammatory genes, was de-repressed in cells expressing the FLAG-L3MBTL2 K675/700R mutant. Finally, we provide evidence that SUMOylation of L3MBTL2 facilitates repression of these PRC1.6-target genes by balancing the local H2Aub1 levels established by the ubiquitinating enzyme RING2 and the de-ubiquitinating PR–DUB complex.

scholarly journals The Drosophila Polycomb Group Protein Psc Contacts ph and Pc through Specific Conserved Domains

1998 ◽  
Vol 18 (5) ◽  
pp. 2712-2720 ◽  
Author(s):  
Michael Kyba ◽  
Hugh W. Brock
Keyword(s):  
Amino Acids ◽  
Ring Finger ◽  
Polycomb Group ◽  
Polycomb Group Proteins ◽  
Polycomb Group Protein ◽  
Yeast Two Hybrid System ◽  
Nuclear Extracts ◽  
Protein Binding Assay ◽  
Group Protein

ABSTRACT The Polycomb group proteins are transcriptional repressors that are thought to act through multimeric nuclear complexes. We show that ph and Psc coprecipitate with Pc from nuclear extracts. We have analyzed the domains required for the association of Psc with ph and Pc by using the yeast two-hybrid system and an in vitro protein-binding assay. Psc and ph interact through regions of sequence conservation with mammalian homologs, i.e., the H1 domain of ph (amino acids 1297 to 1418) and the helix-turn-helix-containing region of Psc (amino acids 336 to 473). Psc contacts Pc primarily at the helix-turn-helix-containing region of Psc (amino acids 336 to 473), but also at the ring finger (amino acids 250 to 335). The Pc chromobox is not required for this interaction. We discuss the implication of these results for the nature of the complexes formed by Polycomb group proteins.

scholarly journals The polycomb group protein complex of Drosophila melanogaster has different compositions at different target genes.

1997 ◽  
Vol 17 (12) ◽  
pp. 6773-6783 ◽  
Author(s):  
H Strutt ◽  
R Paro
Keyword(s):  
Protein Complex ◽  
Target Genes ◽  
Regulatory Elements ◽  
Polycomb Group ◽  
Regulatory Sequences ◽  
Polycomb Group Protein ◽  
Polycomb Group Genes ◽  
Sex Combs ◽  
Group Protein

In Drosophila the Polycomb group genes are required for the long-term maintenance of the repressed state of many developmental regulatory genes. Their gene products are thought to function in a common multimeric complex that associates with Polycomb group response elements (PREs) in target genes and regulates higher-order chromatin structure. We show that the chromodomain of Polycomb is necessary for protein-protein interactions within a Polycomb-Polyhomeotic complex. In addition, Posterior Sex Combs protein coimmunoprecipitates Polycomb and Polyhomeotic, indicating that they are members of a common multimeric protein complex. Immunoprecipitation experiments using in vivo cross-linked chromatin indicate that these three Polycomb group proteins are associated with identical regulatory elements of the selector gene engrailed in tissue culture cells. Polycomb, Polyhomeotic, and Posterior Sex Combs are, however, differentially distributed on regulatory sequences of the engrailed-related gene invected. This suggests that there may be multiple different Polycomb group protein complexes which function at different target sites. Furthermore, Polyhomeotic and Posterior Sex Combs are also associated with expressed genes. Polyhomeotic and Posterior Sex Combs may participate in a more general transcriptional mechanism that causes modulated gene repression, whereas the inclusion of Polycomb protein in the complex at PREs leads to stable silencing.

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